Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:12961

Lancl2 LanC (bacterial lantibiotic synthetase component C)-like 2 ( MGI:1919085)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:12961 EMAGE:12961 EMAGE:12961 EMAGE:12961 EMAGE:12961
"Pseudo-wholemount" of euxassay_013655. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_013655_01 euxassay_013655_02 euxassay_013655_03 euxassay_013655_04
EMAGE:12961 EMAGE:12961 EMAGE:12961 EMAGE:12961 EMAGE:12961
euxassay_013655_05 euxassay_013655_06 euxassay_013655_07 euxassay_013655_08 euxassay_013655_09
EMAGE:12961 EMAGE:12961 EMAGE:12961 EMAGE:12961 EMAGE:12961
euxassay_013655_10 euxassay_013655_11 euxassay_013655_12 euxassay_013655_13 euxassay_013655_14
EMAGE:12961 EMAGE:12961 EMAGE:12961 EMAGE:12961 EMAGE:12961
euxassay_013655_15 euxassay_013655_16 euxassay_013655_17 euxassay_013655_18 euxassay_013655_19
EMAGE:12961 EMAGE:12961 EMAGE:12961
euxassay_013655_20 euxassay_013655_21 euxassay_013655_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:12961Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
12961_wholemount_strong.wlz
12961_wholemount_moderate.wlz
12961_wholemount_weak.wlz
12961_wholemount_possible.wlz
12961_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:12961_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
thymus primordium
weak weak
regionalweak expression: see section 13 14 15 16
thyroid gland
weak weak
regionalweak expression: see section 13 16
forebrain
weak weak
regionalweak expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22
hindbrain
weak weak
regionalweak expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21
midbrain
weak weak
regionalweak expression: see section 07 08 09 10 11 12 13 14 15 16 17 18 19
facial vii ganglion
weak weak
regionalweak expression: see section 05 06 20 21 22
glossopharyngeal ix ganglion
weak weak
regionalweak expression: see section 08 19
trigeminal v ganglion
weak weak
regionalweak expression: see section 04 05 06 07 08 09 10 18 19 20 21 22
vagus x ganglion
weak weak
regionalweak expression: see section 09 18
vestibulocochlear viii ganglion
weak weak
regionalweak expression: see section 07 08 19
trigeminal v nerve
weak weak
regionalweak expression: see section 18
spinal cord
weak weak
regionalweak expression: see section 10 11 12 13 14 15 16
cervico-thoracic ganglion
weak weak
regionalweak expression: see section 11 17
cervical ganglion
weak weak
regionalweak expression: see section 10 17 18
thoracic ganglion
weak weak
regionalweak expression: see section 13 15
dorsal root ganglion
weak weak
regionalweak expression: see section 09 10 11 12 17 18
neural retina
weak weak
regionalweak expression: see section 01 02 03 04 05 22
nasal cavity olfactory epithelium
weak weak
regionalweak expression: see section 10 11 12 13 14 17 18 19
renal cortex
weak weak
regionalweak expression: see section 07 08 09 10 11 17 18 19 20
lung
weak weak
regionalweak expression: see section 05 06 07 08 09 10 11 12 15 16 17 18 19 20 21 22
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T32004
Entity Detected:Lancl2, LanC (bacterial lantibiotic synthetase component C)-like 2 ( MGI:1919085)
Sequence:sense strand is shown

>T32004
GCCTCCCTTTCCACCCTAACGGGAAGATTGTTCCCAACTTCATAAAGCGTATCCAGACCAAAATCAAAGA
TCTTCTGCAGCAGATGGAGGAAGGACTGAAGACAGCGGACCCTCATGACTGCTCTGCATATACTGGTTGG
ACAGGCATAGCACTTTTGTACCTGCAGCTGTACCGGGTCACTGGTGACCAGACCTACCTGCTTCGATCCC
TGGATTACGTGAAGAGAACACTCCGAAATTTGAGTGGTCGCAGAGTCACTTTCCTTTGTGGAGATGCTGG
GCCCCTTGCTGTGGGAGCTGTGATATATCATAAACTCAAAAGTGAATGTGAGTCCCAGGAATGCATCACA
AAACTTCTACAGATGCATAGAACTATTGTCTGTCAAGAGTCAGAGCTTCCTGATGAACTGCTGTATGGAC
GAGCAGGATACCTGTATGCCTTACTGTACCTGAACACAGAGATTGGCCCTGGCACTGTTGGTGAGACAGC
TATTAAAGAGGTAGTCAGTGCTATTATTGAGTCGGGAAAGAGTCTATCAAGGGAAGAAAGGAAATCTGAG
CGCTGCCCCCTGCTCTATCAGTGGCACAGAAAACAATATGTTGGAGCAGCCCATGGTATGGCTGGCATCT
ACTACATGCTAATGCAGCCAGAAGCAAAAGTGGACCAAGAAACCTTAACCGAAATGGTGAAACCCAGCAT
TGATTATGTGCGCCATAAAAAATTCCGATCTGGAAATTATCCATCATCATTAAGCAATGAAACAGATCGA
TTGGTCCACTGGTGCCATGGTGCTCCAGGAGTCATCCACGTGCTCTTACAGGCATACCAGGTTTTTAAGG
AGGAAAAATACTTGAAAGAGGCCATGGAGTGTAGCGATGTGATTTGGCAGCGAGGTCT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:4482042), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 20445. Forward Primer - name:020445_F_IRAV32-35_H08_Lancl2, sequence:GCCTCCCTTTCCACCCTA; Reverse Primer - name:020445_R_SP6_IRAV32-35_H08_Lancl2, sequence:CAGACCTCGCTGCCAAAT. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:12960 same embryo
 EMAGE:12959 same embryo
 EMAGE:12957 same embryo
 EMAGE:12958 same embryo
 EurExpress:euxassay_013655 same experiment
 MGI:4825867 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS