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EMAGE:14108

Ercc4 excision repair cross-complementing rodent repair deficiency, complementation group 4 ( MGI:1354163)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14108 EMAGE:14108
euxassay_003973_01 euxassay_003973_02

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14108Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14108_wholemount_strong.wlz
14108_wholemount_moderate.wlz
14108_wholemount_weak.wlz
14108_wholemount_possible.wlz
14108_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14108_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4370
Entity Detected:Ercc4, excision repair cross-complementing rodent repair deficiency, complementation group 4 ( MGI:1354163)
Sequence:sense strand is shown

>T4370
GCCTGTCGGGCGAACGGCGGAGTATGGCGCCGCTGTTGGAGTACGAGAGGCAGCAGGTGCTGGAACTGCT
CGACAGCGACGGGCTGGTGGTGTGTGCCCGCGGACTCGGCACCGACCGGCTCCTCTACCATTTCCTGCGG
CTTCACTGCCACCCGGCCTGCCTGGTGCTGGTGCTCAACACGCAGCCGGCCGAGGAGGAATATTTTATCA
ATCAGTTGAAGATAGAAGGAGTTGAACATCTCCCTCGACGAGTGACAAATGAAATCGCAAGTAACAGTCG
CTATGAAGTCTACACGCAGGGTGGTATTATATTTGCAACAAGCCGAATACTCGTGGTTGATTTCTTGACA
GGTAGAATACCTTCAGATTTAATAACTGGCATCCTCGTGTACAGGGCACACAGAATCATTGAGTCCTGCC
AGGAAGCCTTCATCCTGCGCCTCTTCCGCCAGAAAAACAAGCGCGGGTTCATCAAAGCTTTCACCGACAA
CGCTGTTGCCTTTGACACTGGCTTTTGTCACGTGGAAAGAGTGATGCGGAACCTTTTTGTGAGGAAGCTC
TACCTGTGGCCAAGGTTCCATGTAGCAGTCAACTCATTCTTGGAACAACACAAGCCTGAAGTTGTAGAGA
TTCACGTGTCCATGACTCCCGCCATGCTTGCCATTCAGACGGCCATACTAGACATCTTAAATGCATGTCT
GAAAGAACTGAAATGTCACAACCCGTCACTTGAAGTAGAAGATTTGTCACTAGAAAACGCTCTTGGGAAG
CCATTCGACAAGACAATCCGCCATTACTTGGACCCTTTGTGGCATCAGCTTGGAGCCAAGACTAAATCCT
TGGTGCAGGATTTAAAGATACTAAGAACCTTACTGCAGTATCTCTCTCAGTATGATTGTGTTACATTTCT
GAATCTTCTGGAATCTCTGAGAGCAACAGAGAAGGTGTTTGGTCAGAATTCAGGTTGGCTTTTCCTGGAT
GCTAGCACCTCCATGTTTGTGAATGCTCGTGCCCGAGTTTACCGAGTTCCAGATGTCAAACTGAACAAAA
AGGCCAAAACATCAGAAAAGACGTCGAGTCCAGAAGTTCAAGAAACAAAAAAAGAACTGGTTCTAGAGAG
CAATCCAAAGTGGGAGGCGCTGACTGACGTCCTGAAAGAAATCGAAGCAGAAAATAAGGAGAGCGAAGCC
CTTGGTGGCCCAGGCCGGGTGCTGATCTGTGCAAGCGATGACCGCACGTGCTGCCAGCTGAGAGACTACC
TGTCCGCCGGAGCAGAAACCTTCCTGCTGCGACTTTATAGGAAAACTTTTGAGAAGGATGGCAAAGCTGA
AGAAGTGTGGGTAAATGTTAGAAAGGGGGACGGCCCGAAGAGAACTACAAAATCTGACAAAAGACCAAAA
GCCGCTCCAAACAAGGAGCGTGCTTCCGCCAAAAGGGGGGCCCCTCTCAAAAGGAAGAAGCAAGAGCTGA
CTCTGACGCAAGTTTTGGGGTCCGCTGAGGAGCCGCCGGAGGACAAGGCTTTGGAGGAAGACCTGTGCAG
ACAGACCAGTAGTAGCCCAGAAGGCTGCGGGGTAGAGATTAAGCGTGAATCATTTGATTTAAATGTGTCG
TCTGATGCGGCCTATGGCATCCTGAAAGAGCCCCTGACCATCATCCATCCGCTTCTAGGGTGCAGCGACC
CCTATGCCCTGACGCGGGTACTGCACGAGGTGGAGCCCAGATACGTGGTTCTGTATGATGCAGAGCTCAC
CTTTGTTCGCCAACTGGAGATCTACAGGGCTAGCAGGCCTGGGAAACCTCTGAGGGTTTACTTTCTTATA
TACGGAGGCTCCACGGAAGAGCAGCGCTACCTGACTGCTCTGCGGAAAGAAAAGGAAGCCTTTGAAAAGC
TCATAAGAGAAAAAGCTAGCATGGTTGTCCCCGAAGAACGGGAAGGCAGAGATGAGACCAACCTGGACCT
AGCAAGAGGCTCAGCAGCCCTGGATGCTCCCACGGACACTCGGAAAGCCGGTGGCCAGGAGCAGAATGGC
ACCCAGTCCAGCATCGTGGTGGACATGCGTGAGTTTCGGAGCGAGCTCCCATCTCTGATCCATCGGCGGG
GTATTGACATAGAGCCAGTGACTCTGGAGGTGGGTGATTACATCCTGACACCTGAGCTGTGTGTGGAGCG
CAAAAGTGTGAGCGACCTCATTGGCTCGCTGCACAGTGGCCGCCTGTACAGCCAGTGCCTAGCCATGTCT
CGCTACTACCGGAGGCCTGTGCTGCTCATTGAGTTTGACCCGAGCAAGCCCTTCTCCCTGGCGCCACGAG
GTGCCTTCTTCCAGGAGATGAGCAGCAGCGATGTGAGCTCCAAGCTTACGCTCCTCACCTTGCACTTCCC
GCGTTTGCGGCTGCTCTGGTGCCCCTCACCCCACGCCACAGCCGAGCTGTTTGAGGAGCTGAAGCAGAAC
AAGCCACAGCCTGATGCGGCCACAGCCATGGCCATCACCGCAGACTCAGAGACACTGCCTGAGTCGGACA
GATATAACCCCGGCCCCCAAGACTTTGTGCTGAAGATGCCTGGGGTCAACGCCAAGAACTGTCGCTCCCT
GATGAACCAAGTGAAGAACATCGCAGAGCTGGCCACCCTGTCCCTGGAACGACTCACAACCATCCTGGGG
CACTCGGGAAATGCCAAGCAGCTGCACGACTTCCTGCACACTGCCTATGCAGACTTGGTGTCCAAAGGCA
GAGTGAGAAAGTGACTGTTCTCACATGGCTATTTATTGATCATTTGCATAGCAATTCATTCTTTCCCCCC
AGGAATGTCCCCCAGGGCATCGGTCCAGAGCCAGAACTTCCCCCTGGGCTCTGTACTGAGGTGTGGGCCT
GTCTTCCCTTGCTGGCTCTCACCCCTCTGTGCTCTGTCTGTGCCAGGCCTGCACTGATCCATTTTCAATA
AGGTGTGGTGAGATCTTGCCCCTTGAAGTAAACACAGACTATGTTTACTTTTCAGGCTGGTAAAAGCACT
GCACCATGGTCCTAACACTGGCTGCACAGGGCTTGGTAGGCCTGAGACAGGACTGCTGTTGCTTCTTCCC
CACCCACACAGAGACAAGCTAGCCCTCTAGCCTCCTGGTCACCAGGTATATGTAACGTGTACTGTGACTC
GGTTGTGTTTTTCACAGAATTAATTGCTTACGGACAAGATTGGATGAGGTAATAAAGGGCTCCTCAGAAA
AAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4911382 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4911382 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14110 same embryo
 EMAGE:14106 same embryo
 EMAGE:14107 same embryo
 EMAGE:14111 same embryo
 EMAGE:14109 same embryo
 EurExpress:euxassay_003973 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS