EMAGE mouse gene expression spatial database

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EMAGE:14142

Cd300e CD300e antigen ( MGI:2387602)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_001841. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_001841_01	euxassay_001841_02	euxassay_001841_03	euxassay_001841_04

euxassay_001841_05	euxassay_001841_06	euxassay_001841_07	euxassay_001841_08	euxassay_001841_09

euxassay_001841_10	euxassay_001841_11	euxassay_001841_12	euxassay_001841_13	euxassay_001841_14

euxassay_001841_15	euxassay_001841_16	euxassay_001841_17	euxassay_001841_18	euxassay_001841_19

euxassay_001841_20

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

14142_wholemount_strong.wlz

14142_wholemount_moderate.wlz

14142_wholemount_weak.wlz

14142_wholemount_possible.wlz

14142_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:14142_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T4181
Entity Detected:	Cd300e, CD300e antigen ( MGI:2387602)
Sequence:	sense strand is shown >T4181 CCACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGCAGTGAGGCAGGAGGATGAGGCTATGTGCAGGTCT GCTCCTTCTCTGCTTCCAAGGTTGTTTGTCTCTGACGGGCCCTGGCTCTGTGTCTGGCTACGTAGGAGGC TCTCTCCGTGTGCAGTGTCAATATAGTCCATCATATAAGGGCTATATGAAATACTGGTGCCGAGGACCGC ATGACACGACATGTAAAACTATTGTAGAAACCGACGGAAGTGAGAAAGAAAAGAGGAGTGGCCCGGTGTC CATCAGAGACCATGCTTCGAACTCCACCATCACAGTGATCATGGAGGACCTCAGCGAAGACAATGCTGGG TCTTACTGGTGCAAGATTCAGACTTCCTTTATCTGGGATTCGTGGTCACGTGATCCATCGGTCAGTGTAA GGGTGAATGTTTTTCCAGCCACAACTCCTACACTCCCAGCCACAACTGCTATCCTCCCACTAGTGAATTC TGGGCAGAACCTGAGGATTAGTACTAATGTGATGTTCATCTTCCAACTGTGGTCCCTGCTCAGCAGCATC CAGTTCCAGGTCCTGGTCTTCCTGAAGCTGCCTCTGTTTCTGAGCATGCTCTGTGCTATCTTCTGGGTGA ACAGACTTTAGGGGGTTCCTGGGGGCAATGTAGAGTGACCCATCCAAGAACTATGAAGTGAAGCATCCCA GGAATGCCCTGGGAGGAACTCAGCCCTGCATGCAGACTGGACTTCATTGTTCTGTGTCTCAAAGGTGGGG AGGGGGTGGGGGCTGATTATCAGAGTCTTGGATTTCAGACTCCTGTGGTGTCCTCAGCATAACAGAGAGA ACAAGACTGGGAGTAAAGGCACTGGGAGTTAATCCCAGCACTGGAGAGGAAGAACCTAGTAAGTCTCTGA GTTAAAGGCCAGCCTAGTCTATATACTGAGTTCCTGGACAGCCAGGGATAAATAATAGACTCTGTCTCAA AGACACCCACAAAAGCGGGAACAAGACTCTCCCGGGGCCCTCTGTTAGAGGTCTGCCTTTCCCTTCTCCA AATTTCCTGGATTCTGCTCTCATGTCAGCTCCAAAGGATAAGAATCTTCTAGAAGTTTCTTGAACAGAAG TCTAGCTCCTTGATCTTCTCAGTGCCATAAAAACATCCCAGGACATTGTCTCCGATGGCAACAATCATCT CCTTACTACAGAGACGAGTTTCCTGAGAAACATGTCCCTCACACACTTGGCTTGCAGGCTGTTGCCCCCT TTCTAGAACAATCCTAAAGGATTTGGCTTCTGGTAGAGCATTTCAACTGCCAACTCTCCCAAGCACACAG AGAGGTCAACTAGGAGTCTAGAGGTGTGGGCTCGCAGAATAAATGTTTAGGGTTGGGGAGAAAGGCACAG GGAGAGGGATTATCAGGTTCCTAGAGGTAGGTGAAATTACCAGGTGAGTGCTCAGCACCAAGGACAGAGC TCACAAGGCGCGGGAAGACTGCTAAGCTAAGCGTTCAGAACCACGGACAGAGACCTAAGAAGCTCTTAGA CCACCAACTATGCCCGTTTCAGCAGCACAGCAGCCACTGCTGTTCTCAGCGTTTTTCACACGAATTCATT TACATGTGTGTTTAGCTATGCAGCTTTATCCTACACATGCATCCAGGTAACGACCATCACAGTCAAAACA GAGGATTGTTCCACCATCACAAGTCCTCCTTCATGCCAGTCTGCCTCATTACTGCCCACTAGAGAACACT GATCTCTGGCTGACTCTGGCTCTGTCACTTTGAGAATGTTCTAGAAAGAGAAGCATTTCAGTGGTATGTC AAGTACAAGGCCTCTGGGATCCACACAAGCAGATGTTCTTGGAAATCATCCATTCCTCTTTATTACTGAG CATTATTCATTGTATACATTCATTACAGTTTGTTTAACTCCTTATTCAGTTAACTATTTGGGTCATTTCC ATTACAAATAAAACTATTATCCACAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:4487018 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4487018 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:14145 same embryo
	EMAGE:14144 same embryo
	EMAGE:14143 same embryo
	EMAGE:14146 same embryo
	EurExpress:euxassay_001841 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source