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EMAGE:14298

Pofut1 protein O-fucosyltransferase 1 ( MGI:2153207)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14298 EMAGE:14298 EMAGE:14298 EMAGE:14298 EMAGE:14298
"Pseudo-wholemount" of euxassay_004150. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004150_01 euxassay_004150_02 euxassay_004150_03 euxassay_004150_04
EMAGE:14298 EMAGE:14298 EMAGE:14298 EMAGE:14298 EMAGE:14298
euxassay_004150_05 euxassay_004150_06 euxassay_004150_07 euxassay_004150_08 euxassay_004150_09
EMAGE:14298 EMAGE:14298 EMAGE:14298 EMAGE:14298 EMAGE:14298
euxassay_004150_10 euxassay_004150_11 euxassay_004150_12 euxassay_004150_13 euxassay_004150_14
EMAGE:14298 EMAGE:14298 EMAGE:14298 EMAGE:14298 EMAGE:14298
euxassay_004150_15 euxassay_004150_16 euxassay_004150_17 euxassay_004150_18 euxassay_004150_19
EMAGE:14298 EMAGE:14298
euxassay_004150_20 euxassay_004150_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14298Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14298_wholemount_strong.wlz
14298_wholemount_moderate.wlz
14298_wholemount_weak.wlz
14298_wholemount_possible.wlz
14298_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14298_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5586
Entity Detected:Pofut1, protein O-fucosyltransferase 1 ( MGI:2153207)
Sequence:sense strand is shown

>T5586
GCTCCCACCCCCTCCCCGCCTCCGGGCCGTGGCACTCTGGGGCTCTGCCGTCGACATGGGCGCCGCCGCG
TGGGCACCGCCACACCTGCTGCTGCGGGCGTCTTTCCTGCTTCTGCTGCTGTTGCTGCCGCTCCGCGGGC
GGTCAGCGGGCTCCTGGGACCTGGCCGGTTACCTGCTCTACTGTCCCTGCATGGGGCGCTTTGGGAACCA
GGCTGATCACTTCTTGGGCTCCCTGGCATTTGCGAAGCTGCTGAACCGCACCTTGGCTGTACCTCCATGG
ATTGAATACCAACATCACAAGCCTCCTTTCACCAACCTCCATGTGTCCTACCAAAAGTACTTCAAACTGG
AGCCTCTCCAAGCCTACCATCGGGTTGTCAGCCTGGAGGACTTCATGGAAAATCTGGCACCCTCCCACTG
GCCCCCTGAGAAGCGAGTGGCATACTGCTTTGAGGTGGCAGCCCAGCGAAGTCCTGATAAGAAGACATGT
CCCATGAAGGAAGGAAATCCTTTTGGGCCATTCTGGGACCAGTTTCATGTGAGTTTCAATAAGTCAGAAC
TGTTCACAGGCATTTCCTTCAGCGCCTCCTACAAAGAACAATGGACCCAGAGATTTCCTGCAAAAGAGCA
TCCTGTGCTCGCACTGCCTGGGGCCCCAGCACAGTTCCCTGTCCTGGAGGAACACAGGGAGCTCCAGAAG
TACATGGTGTGGTCAGATGAGATGGTGAGGACGGGAGAGGCCCTGATCAGTGCCCACCTCGTCCGGCCCT
ATGTGGGCATTCATCTGCGCATTGGCTCCGACTGGAAGAATGCCTGTGCCATGCTGAAGGATGGAACTGC
AGGGTCACACTTCATGGCTTCCCCTCAGTGTGTGGGCTATAGCCGCAGCACAGCGACCCCTCTCACCATG
ACCATGTGCCTCCCTGACCTGAAGGAAATCCAGCGGGCTGTGACGCTTTGGGTGAGAGCACTGAATGCCA
GATCGGTCTACATCGCCACAGACTCTGAGAGCTACGTGTCAGAGATCCAGCAGCTCTTCAAAGACAAGGT
GAGGGTGGTGAGCCTGAAACCCGAGGTGGCCCAGATCGACCTGTACATCCTCGGCCAGGCTGACCACTTC
ATTGGAAACTGTGTCTCCTCGTTCACTGCCTTCGTGAAGCGGGAGCGGGACCTCCATGGGAGGCAGTCGT
CCTTCTTTGGCATGGACAGACCCTCCCAGCTTCGGGATGAATTTTGATCCCATCTGAAGCCCCCACCTCC
CACCCTCAACCAGGCTTGGCTGCTAAGGATGCTCCTGGGATTACACATCCCTTTTCTTTTCTGCCAGAGG
TGGAGAACAGTACCAAGGACGTCCTGGAAGAGAAGGCATTCCATCCCAGGCATTGGCTCCCATGGTCCCC
AGCCAGGGCTGCTCTGGGCTGCATGATCATGCACATACAAAGCAGCCCACCTCCAGCCTGGGCACACCCT
GATATATACACATACATACACATAATATATATCATATATATATAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6485896 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6485896 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14300 same embryo
 EMAGE:14297 same embryo
 EMAGE:14296 same embryo
 EMAGE:14299 same embryo
 EMAGE:14301 same embryo
 EurExpress:euxassay_004150 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS