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EMAGE:14505

Bdnf brain derived neurotrophic factor ( MGI:88145)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14505 EMAGE:14505 EMAGE:14505 EMAGE:14505 EMAGE:14505
"Pseudo-wholemount" of euxassay_005389. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005389_01 euxassay_005389_02 euxassay_005389_03 euxassay_005389_04
EMAGE:14505 EMAGE:14505 EMAGE:14505 EMAGE:14505 EMAGE:14505
euxassay_005389_05 euxassay_005389_06 euxassay_005389_07 euxassay_005389_08 euxassay_005389_09
EMAGE:14505 EMAGE:14505 EMAGE:14505 EMAGE:14505 EMAGE:14505
euxassay_005389_10 euxassay_005389_11 euxassay_005389_12 euxassay_005389_13 euxassay_005389_14
EMAGE:14505 EMAGE:14505 EMAGE:14505 EMAGE:14505 EMAGE:14505
euxassay_005389_15 euxassay_005389_16 euxassay_005389_17 euxassay_005389_18 euxassay_005389_19
EMAGE:14505 EMAGE:14505 EMAGE:14505 EMAGE:14505 EMAGE:14505
euxassay_005389_20 euxassay_005389_21 euxassay_005389_22 euxassay_005389_23 euxassay_005389_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14505Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14505_wholemount_strong.wlz
14505_wholemount_moderate.wlz
14505_wholemount_weak.wlz
14505_wholemount_possible.wlz
14505_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14505_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8285
Entity Detected:Bdnf, brain derived neurotrophic factor ( MGI:88145)
Sequence:sense strand is shown

>T8285
CCTGAGTTCCACCAGGTGAGAAGAGTGATGACCATCCTTTTCCTTACTATGGTTATTTCATACTTCGGTT
GCATGAAGGCGGCGCCCATGAAAGAAGTAAACGTCCACGGACAAGGCAACTTGGCCTACCCAGGTGTGCG
GACCCATGGGACTCTGGAGAGCGTGAATGGGCCCAGGGCAGGTTCGAGAGGTCTGACGACGACATCACTG
GCTGACACTTTTGAGCACGTCATCGAAGAGCTGCTGGATGAGGACCAGAAGGTTCGGCCCAACGAAGAAA
ACCATAAGGACGCGGACTTGTACACTTCCCGGGTGATGCTCAGCAGTCAAGTGCCTTTGGAGCCTCCTCT
ACTCTTTCTGCTGGAGGAATACAAAAATTACCTGGATGCCGCAAACATGTCTATGAGGGTTCGGCGCCAC
TCCGACCCTGCCCGCCGTGGGGAGCTGAGCGTGTGTGACAGTATTAGCGAGTGGGTCACAGCGGCAGATA
AAAAGACTGCAGTGGACATGTCTGGCGGGACGGTCACAGTCCTAGAGAAAGTCCCGGTATCCAAAGGCCA
ACTGAAGCAGTATTTCTACGAGACCAAGTGTAATCCCATGGGTTACACCAAGGAAGGCTGCAGGGGCATA
GACAAAAGGCACTGGAACTCGCAATGCCGAACTACCCAATCGTATGTTCGGGCCCTTACTATGGATAGCA
AAAAGAGAATTGGCTGGCGATTCATAAGGATAGACACTTCCTGTGTATGTACACTGACCATTAAAAGGGG
AAGATAGTGGATTTATGTTGTATAGATTATATTGAGACAAAATTATCTATTTGTATATATACATAACAGG
GTAAATTATTCAGTTAAGAAAAAATAATTTTATGAACTGCATGTATAAATGAAGTTTATACAGTACAGTG
GTTCTACAATCTATTTATTGGACATATCCATGACCTGAAAGGAAACAGTCATTTGCGCACAACTTTAAAA
GTCTGCATTACATTCCTCGATAATGTTGTGGTTTGTTGCCGTTGCCAAGAATTGAAAACAAAAAGTTTAA
AAAAAATAATAATAAATTGCATGCTGCTTTAATTGTGAATTGATAATAAACTGTCCCTCTTTCAGAAAAC
AGATTAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:1397218 using vector (pT7T3D-PacI) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:1397218 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14508 same embryo
 EMAGE:14504 same embryo
 EMAGE:14506 same embryo
 EMAGE:14507 same embryo
 EMAGE:14503 same embryo
 EurExpress:euxassay_005389 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS