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EMAGE:14564

Gabpa GA repeat binding protein, alpha ( MGI:95610)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14564 EMAGE:14564 EMAGE:14564 EMAGE:14564 EMAGE:14564
"Pseudo-wholemount" of euxassay_005429. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005429_01 euxassay_005429_02 euxassay_005429_03 euxassay_005429_04
EMAGE:14564 EMAGE:14564 EMAGE:14564 EMAGE:14564 EMAGE:14564
euxassay_005429_05 euxassay_005429_06 euxassay_005429_07 euxassay_005429_08 euxassay_005429_09
EMAGE:14564 EMAGE:14564 EMAGE:14564 EMAGE:14564 EMAGE:14564
euxassay_005429_10 euxassay_005429_11 euxassay_005429_12 euxassay_005429_13 euxassay_005429_14
EMAGE:14564 EMAGE:14564 EMAGE:14564 EMAGE:14564 EMAGE:14564
euxassay_005429_15 euxassay_005429_16 euxassay_005429_17 euxassay_005429_18 euxassay_005429_19
EMAGE:14564 EMAGE:14564 EMAGE:14564
euxassay_005429_20 euxassay_005429_21 euxassay_005429_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14564Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14564_wholemount_strong.wlz
14564_wholemount_moderate.wlz
14564_wholemount_weak.wlz
14564_wholemount_possible.wlz
14564_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14564_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8796
Entity Detected:Gabpa, GA repeat binding protein, alpha ( MGI:95610)
Sequence:sense strand is shown

>T8796
TATTCTGGCCTGTCCCCTAGTTCAAGCTCCCTTCGGAGTCAGCGTCCCGATCCTTGGGGTTGGGGAGGTG
GATGTAGGGTGGGGGTACAAAGGAGCGCGTAAAAACCAAAACCAAAACAAAACAAAAAACCAAAGCGGCT
GGGGGGCGTTTGTGCCTCGTGAGCCCCGTCGTCGCGGGCGTTTCGGGCCGCGCAGCCTGCTGGGAGTTGT
AGTTCCAGGCCCGGGGGTGCCTGGGAGGCGGGAGAGGGGCTGGGGTTCCTTAGCGCCGATTCCACGGGAA
GGGCCCCGGGACCTTACCCTGCTACTCGCGGGAGCGGCGCGGCTCGCCCGGAGAGGCGCTGTACCTGGAG
CCCGCGCCGCCGCCGTTCCCAGCCGGCTGTGGAAGCGCGGGCTAGGGCCACGGGACGAATTCCGGAGCTG
GACTGAACTTTTGAACGTCTTCAACCATGACTAAGAGAGAAGCAGAAGAGCTGATAGAAATTGAGATCGA
CGGGACTGAGAAAGCAGAGTGCACAGAAGAAAGCATTGTGGAACAAACCTATACCCCAGCTGAATGTGTA
AGCCAGGCCATAGACATCAATGAACCAATAGGCAATTTAAAGAAACTACTAGAACCAAGACTGCAGTGTT
CTTTGGATGCTCATGAAATTTGCCTGCAAGATATTCAGCTGGATCCAGACCGAAGCTTGTTTGATCAAGG
AGTGAAAACAGATGGGACTGTACAGCTTAGTGTACAGGTAATTTCTTACCAAGGAATGGAGCCAAAGTTG
AACATTCTTGAAATTGTTAAGACTGCGGAAACGGTCGAGGTGGTCATCGATCCAGATGCCCACCACGCGG
AAGCAGAAGCGCATCTCGTTGAAGAAGCTCAAGTGATAACTCTTGACGGCACCAAGCACATTACGACCAT
TTCAGACGAGACCTCGGAGCAGGTGACGAGATGGGCTGCTGCACTGGAAGGCTACAGAAAAGAGCAGGAG
CGCCTTGGCATCCCCTATGATCCTATACACTGGTCCACGGACCAAGTCCTGCATTGGGTGGTTTGGGTAA
TGAAGGAGTTCAGCATGACTGATATAGACCTCACCACACTCAACATTTCGGGAAGAGAATTATGTAGTCT
CAACCAAGAAGATTTTTTTCAGCGGGTCCCTCGGGGAGAAATTCTTTGGAGTCATCTGGAGCTTCTTCGA
AAATATGTTTTGGCCAGCCAAGAGCAACAGATGAATGAGATAGTTACCATTGACCAGCCTGTGCAGATTA
TTCCAGCCTCAGTGCCTCCCGCTACACCGACTACGATTAAAGTTATAAACAGCAGTGCAAAAGCAGCTAA
AGTGCAACGGTCCCCAAGGATTTCAGGAGAAGACAGAAGTTCACCGGGGAACAGAACAGGAAACAATGGT
CAGATCCAACTATGGCAGTTTTTGCTAGAACTTCTTACTGACAAGGATGCTCGAGACTGTATTTCTTGGG
TTGGTGATGAAGGTGAATTTAAGCTAAATCAGCCTGAGTTGGTTGCGCAAAAATGGGGACAACGTAAGAA
CAAGCCTACCATGAACTATGAGAAACTTAGCCGTGCATTACGGTATTATTATGATGGGGACATGATTTGT
AAAGTTCAAGGCAAGAGATTTGTGTACAAATTTGTTTGTGACTTGAAGACTCTTATTGGATACAGTGCAG
CAGAACTGAACCGTCTGGTCATAGAGTGTGAACAGAAGAAACTGGCACGGATGCAGCTGCATGGGATTGC
CCAGCCAGTCACGGCAGTAGCACTGGCAGCCACCTCTCTACAGGCAGACAAAGAGATTTGAGACCTAGGA
CCTCCTGGGGAGTCTTAAGGTTTTTCTTAAATATTTAGAGCAAGCTTTGCTCTAACCTTTATTACTGAAT
TTGAATCGTATTTCTAGAGTGTACAATCTGATGCATGATTTTTTTTATAAATATTTCATACTCTTGTGAA
TTTGGATCTTTTTACGTTGAACATATATTTTAGAATATGTTAAAGGATCACCACGATGCCTGCAATGTGA
GAGCAGGTTCATCGGGGTAGTTTGCTAACAGTCAGGAAAGCTAAACTGGTCAGTATTAATGTCTAGCCCT
ACCAAAAAATAGCCAGTAGCGTCTGAAGATGAAAGGAGGGAAGCATTTCCAGGAAACAGCCTGGTGTAGC
CACTGCGGGCGTGGAGCTGTTTCCTCTCCGCTGCTTTACACAGAGCCTGAAAAAGGACATTCTCAGCTAA
AGCATGTGTGCCTGTTTCATCTAATCAAGCAGAGCTAAGCAGTCCTATCAAATACAATTACATTGGTAAT
TACTAAACTATCAGGTTATTAATTTATAATTTACAAGAAGAGAGGAAGTTAACTGGCAGAAGAAAGTGTT
GAATGAGACCCAGATTTAAAGCTGGCTTAACTCAAACCACTATTAATGGTTTTCTGTATAGATTATTCAT
TATGTCAAGCCAAGGTCTTAAATTATTTTGAGAGAGGCATTTAATTCTAATAAACCAGCTATTGCAAAAA
TTCCAAAATGATATCATTCTTTCTCTCAGATTTTAAAAAGTATACCTCAGAAAGAAAAAATTGGTTTAGT
TTTGACTTCCTATTTTTTTAAAAATTAATCTGTAGTACCAGATTATTATGCAAGACCGTTTATATATTCC
CTTCTGTGTTTCTGATAAAATGAAGACTTTAGATCAGGCGACATGTTTAACGTTTGACGTAAGTTCCTTG
TGAGTAGTTATGAAAGGGTTTGACTGGGCTCTGTAGGCGATCTTCTTTAAATAAAGTTTCCCACTTGTTT
CATTTTTTTTCTTTTGAATATTGCATATATGACTCTTAAAAAATACTGTACACATGACTAGCTAACCATT
TCTGCATATATGAAGACAGATATTCAAGGGGAGATTAATATTTCTAACATTTTTAAATAAATCTTATATG
AAATGCCTTACTGCTTGCTAACACTAAGAAGAAATGCCTAAAAAATTTTTTTCTTCATTTATTTTAAAGT
ATTATCCATAAATCATGATATGAGAGATTAGCATATAGTTTTCATAACAGAAAGGAATTCCTCAGAACAG
GATAAAGGCTACTTTATATACACCTCTCTCATTTGTTTTTCTTTCAGTTCATTTCCCAAATTGGCTTTAG
AAGAGTTTGAGGAGAGAAAGTGCAGCCTGATGATGCAGCCAGGACCGAGTGTTAGGGAGAAGACAGAGGG
TTTCTTACCTCCTATATCATGACTTCCAGTGCTGGGCTGTCAGACTTCAACAAGGGTTGCTAGTTTCTTT
ATATTAAGTCCTTTAAGATTATACAGTAAATAGTTAAAAAGAGTAAAATCCTATTTTTTTATATTTGCTC
TTTGTTTTTATAAACAACAGTAGGCAGGCAAATTATTAGTACAGTTTGGTCACCATGAATTGAAAGAGTA
GAGTATAAGAATAATCTTTAGGCCCTGACTTTCGACAGCAAATAGGCCTGGGAGCCGTAAGTCACTGCTT
GAGAACAGGGCATTGCCGCAGTACATCAGAGCTTGAGAAGCTCAGACTTACAGTGTGTTGGAGACATTAT
GTTAAAGCTTTAGCCAAGAGGACAGACTTTGTGTATCATTCGGAGGAATGTGTTTTAAGGAAAGGAACAT
TTATATTTGTTCTAGGTCCCTACAATCAAACATTTCCAAATCCTTAACAAAACAAAACAAAACACACAAA
ACGTGTTGTATAGCTTTGCTTCCTTTGGAAGCTGGTGGGTTAGTTGTGATTTGAGCACAGTTCTCAGATC
TTAGGTGGTTGTTCTCTACCCCTCCTGCATCCTCCATGCTCCCCCCACACGGAAGGAGACCCAAGCTTTC
TCACTCTGGCTCCACTGAGAGTTCAAAGATGTGTTGTTCTTATTGAGGCCCCAGTTTGCTATCATCTATT
AAAATAACTCATGTTATAAAAGAATGTTAATTCATGGTAATCCTTGCTCAGTTTTGTCGTGCATTTTTCA
TAGAGCCTAAGATACAGTTGAACAAAAAGAACAGAAAACGGTCTGACCATCTTTTGTACCTTATAAGTTG
AAGAATAATGAAATGTTCCTGTTGCTAGAAAAGCGAGTTTTCCATGTGATGTTTACATTGACGTCATTTT
ATATCTGTGCTAGCCTGAAGTCTGAGCTAGCCTGAGGTCTGTGCTAGCCTGAGGTCTGAGTTAGCCTGAG
GTCTGAGCTAGCCTGAGGTCTGAGCTAGCCTGTAGTCTGTGCTAGCCTGAAGTCTGAGCTAGCCTGAGGT
CTGAGCTAGCCTGTAGTCTGTGCTAGCCTGAAGTCTGAGCTAGCCTGAGGTCTGTGCTAGCCTGAGGTCT
GAGCTAGCCTGAGGTCTGAGCGTTGGTGCTGGCATTGGAAGGTGCAGCCAGTTAGGCAGAAGTGCTGGCT
GTGACTGAGCTCCTCATGATGAGTTAGCCAACTGCATTCATTTTAGTGTTGATCCATGTAAATAAAGTAG
GAAAAATTATTCAGTTTTTCTCCCCAGATAAACAGTAATGCTGGAGTATGGTTATTTCTTTTAAAGAGTG
TACCTCCAAGTATTTTTGGCAAGTTCTGTCATTTTCTGCATTTGCCATTTATGCTACTGCCTTTTATAAA
GAACTAGTGTATCCTTGAAATAGCACAAAAATGTTTTAAAATTTATAATTGCAAAACAAACCTGTGACTG
ACTTAATGTCTTCAGATCTAAAGGCTATAAAAAAAATGTTGATATTCAATATTTCACTTACTCCCAAGAA
AAAATACTCTTGAGTCTTTTGTAGAAGGGAGGAGAATTTTTGCATACATTTTTACTCTTTAAATAAAGAC
ACTTATACTATCATAATAACAATTATGTATTTCTTTGTTTTTTTGTAATTTTACATAAAACAGTTATTTT
CTATTTTTACTCAGATAAATATTTGTGCATAAAATGTAAAAATAGTAAATGAGAAAAATTATTATACAAT
AAATTCTTATGTTGAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6408997 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6408997 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14566 same embryo
 EMAGE:14563 same embryo
 EMAGE:14567 same embryo
 EMAGE:14565 same embryo
 EurExpress:euxassay_005429 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS