EMAGE mouse gene expression spatial database

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EMAGE:17271

Snx4 sorting nexin 4 ( MGI:1916400)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_003675. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_003675_01	euxassay_003675_02	euxassay_003675_03	euxassay_003675_04

euxassay_003675_05	euxassay_003675_06	euxassay_003675_07	euxassay_003675_08	euxassay_003675_09

euxassay_003675_10	euxassay_003675_11	euxassay_003675_12	euxassay_003675_13	euxassay_003675_14

euxassay_003675_15	euxassay_003675_16	euxassay_003675_17	euxassay_003675_18	euxassay_003675_19

euxassay_003675_20	euxassay_003675_21	euxassay_003675_22	euxassay_003675_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

17271_wholemount_strong.wlz

17271_wholemount_moderate.wlz

17271_wholemount_weak.wlz

17271_wholemount_possible.wlz

17271_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:17271_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T5688
Entity Detected:	Snx4, sorting nexin 4 ( MGI:1916400)
Sequence:	sense strand is shown >T5688 CAGCTATGGAGCAGGCACCTCCGGACCCCGAGAAGCTCTTGCAGCCTGGACCCCTGGAGCCGCTGGGTGG CCCTGGCGCTGTGCTGGAGGCCGCGGTCGGTGAGGAGAACGAGGGCACCCGAGAAGACGGCTCAGGGGTC GACACGATGACGGGAAATAATTTTTGGTTGAAGAAAATAGAAATCAGTGTTTCAGAAGCAGAGAAGAGAA CCGGAAGGAACGCCGTGAACATGCAAGAAACGTACACTGCCTACCTCATCGAGACGCGGTCAGTTGAGCA TGCCGATGGTCAGAGTGTGCTCACAGACTCGCTGTGGAGGCGGTACAGTGAGTTCGAGTTGTTGAGAAAC TACCTTCTAGTGTACTACCCACATGTTGTTGTGCCACCTCTCCCAGAAAAGCGGGCAGAGTTCGTGTGGC ATAAACTCTCTGCTGACAACATGGACCCAGACTTTGTGGAGAGACGACGCGTGGGCTTAGAAAACTTCCT CTTGAGGGTTGCTTCACATCCTGTCCTTTGTAGAGACAAAATCTTCTATTCATTTTTAACCCAGGAAGGT AACTGGAAGGAGACTGTGAATGAGACTGGATTTCAGCTGAAGGCAGACTCCAGGTTAAAAGCGCTTAATG CAACATTCAGAGTGAAAAACCCAGACAAGAGGTTTACTGAGCTGAGGCACTACAGTGATGAGCTGCAGTC TGTCATCTCGCATCTCCTTCGAGTCAGAGCTAGAGTAGCAGATCGACTCTATGGTGTATATAAAGTACAT GGGAATTATGGGAGAGTTTTTAGTGAATGGAGTGCCATCGAAAAAGAAATGGGGGATGGGCTGCAGAGTG CTGGGCATCACATGGACGTGTATGCATCTTCTATTGATGATATTTTGGAAGATGAAGAGCACTATGCAGA TCAGCTGAAGGAGTATCTGTTTTATGCAGAAGCACTTCGGGCTGTGTGCAGGAAGCATGAGCTTATGCAG TATGACCTGGAGACAGCTGCTCAAGACCTGGCTGCCAAGAAGCAGCAGTGCGAGGAGCTGGCCACCGGGA CTGTGAGAACATTCTCATTGAAGGGAATGACTACCAAACTCTTTGGTCAAGAAACTCCAGAGCAAAGAGA AGCCAGGATAAAGGTGCTAGAGGAGCAGATAAATGAAGGGGAACAGCAGCTGAAGTCTAAAAATCTGGAA GGCAGAGAATTTGTGAAAAATGCATGGGCTGATATTGAACGCTTCAAAGAACAAAAGAACCGGGACCTAA AGGAAGCTCTCATCAGCTATGCTGTCATGCAGATCAGCATGTGCAAAAAGGGAATTCAGGTTTGGACCAA TGCTAAAGAATGCTTCAGCAAGATGTAACCCCATGAAGTGACTTTTCTCTGCAATCAAAGCCCCAAAACG AAGCACAAGTAAAAGAAAATCTATTGCTACCTTATACATAGAAGCATACCGTACATGGAACAAATCAGCT TTCTTTAAGCATAGTTGTGTTCATATAGCACAAATGATACATTTTAATGAAGAATAAATATTATAATTTG AAGTTTTGGGGACTGGTGCTGATTCCAAAAAAGTTAATTTAATAAGATAACCAACAGATTGTTAGTCAGG CTCCTGATCCAGTGCCTCCGTCAGGATGTGAGTTAATCTCCATGTGCGCCTCTCAGTGCCCACTGTCCAG ATCTCTTCACAGGGCAGTTCTTCCCAGACCAGACGCCCAGATTTACTTTGTAGGACCCACTTCTGCTGTA CAGTTATTTTATCTTGCCTTAGAGTTGAGCTGTTTGGTTTGACAAAGCTCAGCAGAAACTTGTTGTGAAG TCTAAGGTTTTTTTCTGTGTTCCTAGATCCTGTACCATCTACAACACTAGAAAATGCCTTCAGTTTGTGT CTCACCAAAATTTTGATACTGGTCAGAAATTTTATACTGCCAATAATGAAGTCTCAGCTTCTCAGATTTG CAGTGGAATAGATACATTATTATAATCTAGAAATTGCTATATAGAGAGTATTAATTTAAAATTATTATTC TCAGATAAGAAGTGTTAACTTCGGCAGCAGCCTCCATTTCTTCTGCTCAGCTCTGTGCTCATGGCGTTTC AGGGTACGAGGTGTAGCATCTCCATGTGTGAGACACTCGTAGTGAGCACATGTGAGCGGTACCGTCACCA TTAATGTGCGTTTCTGTTGCCTGGCTGTGATTTTTGTAAAGATAAATGATGTTGTTGTGCTTTAGTGTGT GTTTCATGGCACATGTTCAGAAGCCAAGCACACTCTCTGCCAGCTTGCAGACTCCTCCTAACCATGCACT CATTATTTCTAATGTTTTAAAACTATACTCAGTACTGTTTGACATTTGACTTTTTTACATGTTTAAAATG TTGCTGGATTTTTGTGCTGTTTGCCAAACTTATATAATAAAGGAAGTGTTGTGTTTATTTCCAAAAAAAA AAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:2644991 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:2644991 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:17273 same embryo
	EMAGE:17272 same embryo
	EMAGE:17276 same embryo
	EMAGE:17274 same embryo
	EMAGE:17275 same embryo
	EurExpress:euxassay_003675 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source