EMAGE mouse gene expression spatial database

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EMAGE:17390

Cdh11 cadherin 11 ( MGI:99217)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_003840. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_003840_01	euxassay_003840_02	euxassay_003840_03	euxassay_003840_04

euxassay_003840_05	euxassay_003840_06	euxassay_003840_07	euxassay_003840_08	euxassay_003840_09

euxassay_003840_10	euxassay_003840_11	euxassay_003840_12	euxassay_003840_13	euxassay_003840_14

euxassay_003840_15	euxassay_003840_16	euxassay_003840_17	euxassay_003840_18	euxassay_003840_19

euxassay_003840_20	euxassay_003840_21	euxassay_003840_22	euxassay_003840_23	euxassay_003840_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

17390_wholemount_strong.wlz

17390_wholemount_moderate.wlz

17390_wholemount_weak.wlz

17390_wholemount_possible.wlz

17390_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:17390_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T7770
Entity Detected:	Cdh11, cadherin 11 ( MGI:99217)
Sequence:	sense strand is shown >T7770 CAGCCGCCGCCGACTTGTGAATGGGACTCGGACCGGGGCCCGGGCTGACACCGCTGCGCTCGCCCCGTGC CAGGGACAGCCGGCCAGGAGGTCGTGTCCACCCGCAACGGCCCCAGAAATTACTGTGCTTTGTGGCCCTT TGAAGACATTCAGTTCTGTTATTTATTGAATGACCAATCAGATGGGTGGAGCATGTTATAGGAATTGGCA GCAGGTATCCAATGGGTGAAGAAGAAGCTGACTGCGGAGGTGACCAACCCTGGCGTGATGTCCTCAGTGA GTGAAGATATTCCATTCCAGAGGAGGTCTACTTGACACATCTGGGAGGCCGCCATCCGAAAGAAAGCCAC TCTGTTGGTGTAGGGAGTGACAGCTGCATTCTCCTGTGCCTACTGCATAACCAAAAATGAAGGAGAACTA CTGTTTACAAGCTGCCCTGGTGTGCCTGAGCATGCTATACCACAGCCAGGCGTTTGCTCTGGAGCGACGA AGCCACCTGCATCCCTCTTTCCATGGACACCATGAGAAGGGCAAGGAGGGGCAGGTGCTGCAACGCTCCA AGAGAGGCTGGGTCTGGAACCAATTCTTTGTGATAGAAGAGTACACCGGGCCTGACCCTGTGCTGGTGGG CAGGCTTCATTCTGACATTGACTCCGGTGATGGGAACATTAAATACATTCTCTCAGGTGAAGGAGCGGGA ACCATTTTTGTGATTGATGACAAATCAGGGAACATTCATGCCACCAAGACATTGGACCGAGAGGAGAGAG CCCAGTACACACTGATGGCTCAGGCGGTGGACAGGGACACCAACAGACCACTGGAGCCACCTTCAGAATT CATTGTTAAGGTCCAGGACATTAATGACAACCCTCCAGAGTTTCTGCATGAAATCTATCATGCCAATGTG CCTGAGAGGTCCAATGTGGGAACATCAGTTATCCAAGTGACAGCCTCTGATGCAGATGATCCCACCTATG GAAATAGTGCCAAGTTAGTGTATAGCATCCTTGAAGGACAACCCTATTTCTCGGTGGAGGCCCAAACAGG TATCATCAGGACAGCCCTTCCCAATATGGACAGAGAAGCCAAGGAGGAGTACCACGTGGTGATCCAGGCC AAGGACATGGGTGGACACATGGGTGGACTCTCAGGGACAACCAAAGTGACGATCACTCTGACTGATGTCA ACGACAACCCACCAAAGTTTCCACAGAGCGTGTACCAGATGTCTGTATCAGAAGCAGCTGTCCCGGGGGA GGAAGTAGGAAGGGTGAAGGCTAAAGACCCAGACATTGGAGAAAATGGCTTAGTCACATACAATATCGTT GATGGAGACGGCATAGAACTGTTTGAAATTACAACAGACTATGAAACACAGGATGGTGTGGTGAAGCTGA AAAAGCCTGTAGATTTTGAAACCAAAAGAGCTTATAGCTTGAAGATAGAGGCCGCCAATGTTCACATTGA TCCGAAGTTCATCAGCAATGGACCTTTCAAGGACACTGTGACCGTCAAGATTTCAGTAGAAGATGCCGAT GAGCCTCCCATGTTCTTGGCCCCAAGTTATATCCATGAAGTTCAAGAAAATGCAGCTGCTGGCACTGTGG TTGGGAGAGTACATGCCAAAGACCCAGATGCTGCCAACAGCCCAATAAGGTATTCAATTGATCGTCATAC TGACCTCGACAGGTTTTTCACGATTAATCCAGAAGATGGTTTTATTAAAACTACGAAACCTCTAGATAGG GAAGAAACTGCCTGGCTCAACATCTCTGTCTTCGCAGCAGAAATTCACAACAGACATCAGGAAACCAAAG TCCCAGTGGCCATCAGGGTCCTGGATGTCAATGACAATGCTCCTAAGTTTGCTGCCCCTTATGAAGGTTT TATCTGTGAGAGCGATCACCCCAAGGCACTCTCCAACCAGCCAATAGTTACAGTTAGTGCAGATGACCAG GACGACACAGCCAATGGACCAAGATTTATCTTCAGCCTACCCCCTGAAATCATGCACAACCCAAACTTCA CAGTAAGAGACAACAGAGATAACACTGCAGGAGTATATGCCCGACGTGGAGGGTTCAGTCGGCAGAAGCA GGACTTCTACCTCCTGCCCATTGTGATCAGTGATGGTGGCATTCCACCTATGAGTAGCACCAATACCCTC ACTATCAAAGTCTGTGGCTGTGATGTGAATGGGGCACTGTTGTCCTGTAACGCTGAAGCCTACATCCTGA ATGCCGGTCTGAGCACTGGGGCACTGATCGCCATCCTTGCCTGCATCGTCATTCTTCTGGTCATCGTTGT GCTGTTTGTTACCCTGAGGAGGCAAAAGAAAGAACCACTCATTGTATTTGAAGAGGAGGATGTCCGTGAG AACATCATAACCTATGATGATGAAGGGGGTGGTGAGGAAGACACTGAAGCCTTCGACATAGCCACCCTGC AGAATCCTGACGGCATCAATGGATTTATCCCTCGCAAAGATATCAAACCTGAGTATCAGTATATGCCTAG ACCTGGGCTGCGACCAGCACCCAACAGTGTGGATGTGGACGACTTCATCAACACAAGAATACAGGAGGCA GATAATGATCCCACAGCCCCTCCCTATGACTCCATCCAAATCTATGGTTATGAGGGCCGGGGTTCCGTGG CTGGGTCCCTGAGCTCCTTGGAGTCTGCCACGACAGACTCAGACCTGGACTACGACTATCTACAGAACTG GGGACCTCGTTTTAAGAAACTGGCAGACTTGTATGGCTCCAAAGACACTTTTGATGATGACTCTTAACAA TAATGTTACAAATTTGGCCTTAAGAACTGTGTCTGGCATTCTCAAGAATCTAGAAGATGTGTAAACAGGT ATTTTTTTAAATCAAGGAAAGGCTCATTTTAAAACAAGCAGAGTTTTACAGAGAGGAAACATTTAATAAA ACTGCAAGGACATCAAAGTGGAAAATACTGTGAAGTACCTTTTCCCACTTAAAAAGCAAATATTGAAGTT GTTTATCAACTTCAGTAGAAAAAAAAAAACCACTTGGCACACAAAATATTTAAATGAAGGAGAAGTCCAC GGTGAACTTACAATGAAGGGAAATCGTCTATGTGTTAAGAACATCTAAGTCTCTCTTATTTTATTTTTTA ATTTGTCAAAGAAGCTTCCACAAAATTAGAAAGGACAACAGTTCTGAGCTGTAATTTCGCCTTAAACTAT GGACACTCTATCTGTAGTGCGTTTTTAAACTTGAAATATATAATATCCAGCCAGCTTAAACCCATACAAT GTATGTACAATACAATGTACAATTATGTCTCTTGAGCATCAATCTTGTTACTGCTGATTCTTGTAAATCT TTTTGCTTCTACTTTCATCCTAAACTAATACGTGCCAGATATAACTGTCTTGTTTCAGTGAGGAGCACCC TATTTCTATGTCATTTTTAATGTATCTATTTGTACAATTTTAAAGTTCTTATTTTAGTATACATACAAAT ATCAGTATTCTGACATGTACGAAAATGTTACAGCATCACACTTATATTTTATGAACATTGTACTGTTGCT TTAATATGAGCTTCAATATAAGAAGCAACCTTTGAAATAAAAAAAAGATTCTTTTTTAAAAAAAAAAAAA AAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6312939 using vector (pCMV-SPORT6.1) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6312939 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:17392 same embryo
	EMAGE:17393 same embryo
	EMAGE:17391 same embryo
	EurExpress:euxassay_003840 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source