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EMAGE:19602

Slc7a6os solute carrier family 7, member 6 opposite strand ( MGI:1916951)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19602 EMAGE:19602 EMAGE:19602 EMAGE:19602 EMAGE:19602
"Pseudo-wholemount" of euxassay_004941. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004941_01 euxassay_004941_02 euxassay_004941_03 euxassay_004941_04
EMAGE:19602 EMAGE:19602 EMAGE:19602 EMAGE:19602 EMAGE:19602
euxassay_004941_05 euxassay_004941_06 euxassay_004941_07 euxassay_004941_08 euxassay_004941_09
EMAGE:19602 EMAGE:19602 EMAGE:19602 EMAGE:19602 EMAGE:19602
euxassay_004941_10 euxassay_004941_11 euxassay_004941_12 euxassay_004941_13 euxassay_004941_14
EMAGE:19602 EMAGE:19602 EMAGE:19602 EMAGE:19602 EMAGE:19602
euxassay_004941_15 euxassay_004941_16 euxassay_004941_17 euxassay_004941_18 euxassay_004941_19
EMAGE:19602 EMAGE:19602
euxassay_004941_20 euxassay_004941_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19602Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19602_wholemount_strong.wlz
19602_wholemount_moderate.wlz
19602_wholemount_weak.wlz
19602_wholemount_possible.wlz
19602_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19602_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8023
Entity Detected:Slc7a6os, solute carrier family 7, member 6 opposite strand ( MGI:1916951)
Sequence:sense strand is shown

>T8023
GACAAGAGGTAATCCGCTATGGAGGCCGGCAGGACTGCGGTGTTGCGCGTGAAGCGGAAGCGCAACGCGG
AGCCCGCCGAGGCGCTCGTGCTGGCCTGTAAACGCCCCCGGAGCAGCGAGGTCGAGTCGGCGGCTCGGGA
GACGCCAGAGGGCCAGGAAGCGGCGGCGGCGGAGAGAAATGTCTTCCAGTTGGTTGCCACCGTGCGATCC
CAGGAGGAGCCAATCCAGCAGCTTGTGCGGGCTGCCTTGCGCCCGTCCCGGAGCAGCCAGCTGCGTATCC
GCCGCGATCTTCGTGCCTCGGTGCGCGAGGTCCGTAAAGAGGGCCGCTACAGGGTGGTCTCCAGCCACCG
ATCCTCGGGAACCTCGAACAGTTTGGAGCCTCAGTGTGGGTCAGAAGCTGTCGGGGATGCGGGCTTCCAG
TTGTTGGACCTGGTCCACGAGGAGGAAAACCCAGAGGCTGCTGCCACCGACTGCCGCAAAACATCTGATC
CAGATGTGATCCTCTGCAATTCTGTAGAGTTGATCCGTGAGAGGCTGACTGTATCCGAGGATGGATCCCA
AGTAAACCACCAGGAGGACCCAAAGCACAATGACGACTATGTATATGACATTTACTATATGGAGATGGCC
CCTCCAGGGTGGATTGAGAACATCATGTCCGTGCAGCCCTACAGCCAGGAATGGGAGCTGGTAAATGATG
ATGAGCAGTCAGAAGATATTTATGAAGATGAAGATGATGAAAACAGTGAAAATAACTGGCGGAATGAGTA
CCCGGATGAAGAAAGCAGTGATAGAGATGAAGATTCCAGAGGCTCTGATGAATACAACAGCCTCAGCGAG
GAGGAAAGAAGCTGCGAGCGACTGATGTGGAGCAAGTACCCTTTGGATGTACAAAAGGAGTTTGACTATG
ACAGCCCCCATGGTCTGGATTCAGATTGATGGTTTGCTGGTATTTGTGAGATTCTTCCATGGGCCTTTAA
GGCTCTGACTACAGAGTCATCATCTTAGGATTCCTAACTGAACATGTGGAAAGAAAAGCCTTTACCCCAG
CACAGTGAGGACTTCCTTGTAAGTGATAAGTGACGCCAAACACGCTGGGTCATGTCTGTAATTCCAGCAT
TGGAGAGTTTGGGGGCCAAGAAGAGCACTGAGAATACAAGGCCAGCCTTTAGACTAAACAGCCTGGGCAT
TCTATTTTTAAAAAGTGATCTTACACTCTGGAAAATAAAATGATGTAAAACCTCCATAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30021749 using vector (pSPORT1) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30021749 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19599 same embryo
 EMAGE:19601 same embryo
 EMAGE:19598 same embryo
 EMAGE:19600 same embryo
 EurExpress:euxassay_004941 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS