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EMAGE:21144

Lrfn1 leucine rich repeat and fibronectin type III domain containing 1 ( MGI:2136810)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21144 EMAGE:21144
euxassay_004047_01 euxassay_004047_02

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21144Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21144_wholemount_possible.wlz
21144_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21144_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6114
Entity Detected:Lrfn1, leucine rich repeat and fibronectin type III domain containing 1 ( MGI:2136810)
Sequence:sense strand is shown

>T6114
GGGCTGGGTACCGGCCCAGGCCCTGACTCCTTGAAGAGAGATGAAGAAACCGAGATTCACAGAGGTTCAG
ACACTTGCCCCAGGTCACACAGCTAGTCTCTCCCATTCCTGCCTCCCCCCTGCACCATGGCTCCAGGCCC
CTTCTCCTCCAGGCTCTTCTCGCCACCACCTGCTGCTCTTCCCTTTCTGCTGTTGCTCTGGGCAGGAGCA
TCTCGCAGCCAGCCCTGCCCCGGTCGCTGCATCTGTCAGAACGTGGCACCTACGCTGACCATGCTGTGTG
CGAAGACGGGCCTGCTCTTTGTGCCACCCGCCATCGACAGGCGTGTGGTAGAGCTGCGGCTCACTGACAA
CTTCATTGCGGCTGTGCGTCGTCGAGACTTCGCCAATATGACCAGCCTGGTCCACCTCACCCTGTCTCGA
AACACCATTGGCCAGGTAGCAGCCGGCGCCTTTGCTGACCTCCGGGCTCTCCGGGCCCTGCACCTTGACA
GCAACCGCCTGGCAGAGGTGAGAGGGGATCAGCTCCGAGGCTTGGGTAACCTCCGCCACTTGATCCTCGG
CAACAATCAGATCCGTAAGGTGGAGTCGGCAGCCTTTGACGCCTTCCTGTCCACCGTGGAGGACCTGGAT
CTATCCTACAACAACCTGGAGGCACTGCCATGGGAGGCGGTGGGTCAGATGGTGAACTTGAACACCCTCA
CGCTGGACCACAACCTCATTGATCACATTGCGGAGGGCACCTTCGTGCAGCTGCACAAACTCGTGCGCTT
GGACATGACCTCCAACCGTCTACATAAATTGCCCCCCGACGGACTGTTCCTGAGGTCCCAGGGCGGTGGG
CCCAAGCCACCCACCCCATTGACGGTCAGCTTCGGTGGCAACCCGCTGCACTGCAACTGTGAACTGCTCT
GGCTTCGGCGCCTGACCAGGGAGGACGACTTGGAGACGTGTGCCACGCCCGAGCATCTCACTGACCGCTA
TTTCTGGTCCATCCCGGAGGAGGAATTTCTATGTGAGCCCCCGCTCATCACACGGCAAGCAGGGGGCCGG
GCCCTGGTGGTAGAGGGCCAGGCTGTCAGTCTGCGCTGCCGGGCTGTGGGTGACCCCGAGCCCGTGGTGC
ATTGGGTGGCACCTGATGGGCGGCTGCTGGGGAACTCCAGCCGGACTCGGGTCCGTGGTGACGGAACGCT
GGATGTGACTATCACCACCCTGAGGGACAGCGGTACCTTCACTTGCATAGCCTCCAATGCTGCGGGGGAA
GCCACGGCACCTGTGGAGGTATGTGTGGTACCTCTGCCACTGATGGCGCCCCCACCCGCTGCCCCGCCGC
CTCTCACTGAACCTGGTTCTTCTGACATCGCCACACCAGGCAGACCTGGTGCCAACGACTCAGCCACTGA
GCGCAGGCTTGTGGCTGCTGAACTCACGTCTAGCTCTGTGCTCATCCGCTGGCCGGCCCAGAGGCCAGTG
CCTGGCATCCGTATGTACCAAGTGCAATACAACAGCTCTGCAGATGACTCCCTAGTCTACAGTTCTAGCT
GTCCTGGAACTCACTATGTAGACCAGGATGGCCTTGAAATCAGAGTGCCGCTTGCTTCTGCCTGAGCGCT
GGGAAAAATGACCTGTGCCATCACCGCCTGGCCCTGAAATAAAAGTTTATAAAGAAATAAAAAAAAAAAA
AAA
Notes:The probe template was PCR amplified from IMAGE:3494023 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3494023 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_004047 same experiment
 EMAGE:21142 same embryo
 EMAGE:21143 same embryo
 EMAGE:21145 same embryo
 EMAGE:21146 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS