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EMAGE:21461

Cxxc1 CXXC finger 1 (PHD domain) ( MGI:1921572)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21461 EMAGE:21461 EMAGE:21461 EMAGE:21461 EMAGE:21461
euxassay_002827_01 euxassay_002827_02 euxassay_002827_03 euxassay_002827_04 euxassay_002827_05
EMAGE:21461 EMAGE:21461 EMAGE:21461 EMAGE:21461 EMAGE:21461
euxassay_002827_06 euxassay_002827_07 euxassay_002827_08 euxassay_002827_09 euxassay_002827_10
EMAGE:21461 EMAGE:21461 EMAGE:21461 EMAGE:21461 EMAGE:21461
euxassay_002827_11 euxassay_002827_12 euxassay_002827_13 euxassay_002827_14 euxassay_002827_15
EMAGE:21461 EMAGE:21461 EMAGE:21461 EMAGE:21461 EMAGE:21461
euxassay_002827_16 euxassay_002827_17 euxassay_002827_18 euxassay_002827_19 euxassay_002827_20
EMAGE:21461
euxassay_002827_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21461Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21461_wholemount_strong.wlz
21461_wholemount_moderate.wlz
21461_wholemount_weak.wlz
21461_wholemount_possible.wlz
21461_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21461_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T403
Entity Detected:Cxxc1, CXXC finger 1 (PHD domain) ( MGI:1921572)
Sequence:sense strand is shown

>T403
TGCAACGAGTGGTTCCATGGAGACTGCATCCGGATCACTGAGAAGATGGCCAAGGCCATCCGGGAATGGT
ACTGTCGGGAGTGCCGAGAGAAGGACCCGAAGCTGGAGATTCGTTACCGCCACAAAAAGTGCCGGGAGAG
GGATGGCAGTGAGCGGGCCGGCAGTGAGCCCCGGGATGAGGGAGGAGGGCGCAAGAGGCCGGCTTCAGAT
CCAGAGCTGCAGCGCCGGGCAGGGTCAGGGACAGGGGTTGGGGCCATGCTTGCTCGGGGCTCTGCTTCCC
CCCACAAATCTTCTCCACAACCCTTGGTGGCCACACCTAGCCAGCACCACCACCAACAGCAGCAGCAGCA
GCAGCAGCAAATCAAACGATCAGCTCGGATGTGTGGTGAGTGCGAGGCCTGCCGACGCACTGAGGACTGT
GGCCACTGTGACTTCTGCCGTGACATGAAGAAGTTTGGGGGCCCCAACAAGAT
Notes:The probe template was PCR amplified from IMAGE:3157132 using vector specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:3157132 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_002827 same experiment
 EMAGE:21460 same embryo
 EMAGE:21464 same embryo
 EMAGE:21459 same embryo
 EMAGE:21463 same embryo
 EMAGE:21462 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS