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EMAGE:21611

Akr1a1 aldo-keto reductase family 1, member A1 (aldehyde reductase) ( MGI:1929955)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21611 EMAGE:21611 EMAGE:21611 EMAGE:21611 EMAGE:21611
"Pseudo-wholemount" of euxassay_004321. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004321_01 euxassay_004321_02 euxassay_004321_03 euxassay_004321_04
EMAGE:21611 EMAGE:21611 EMAGE:21611 EMAGE:21611 EMAGE:21611
euxassay_004321_05 euxassay_004321_06 euxassay_004321_07 euxassay_004321_08 euxassay_004321_09
EMAGE:21611 EMAGE:21611 EMAGE:21611 EMAGE:21611 EMAGE:21611
euxassay_004321_10 euxassay_004321_11 euxassay_004321_12 euxassay_004321_13 euxassay_004321_14
EMAGE:21611 EMAGE:21611 EMAGE:21611 EMAGE:21611 EMAGE:21611
euxassay_004321_15 euxassay_004321_16 euxassay_004321_17 euxassay_004321_18 euxassay_004321_19
EMAGE:21611 EMAGE:21611 EMAGE:21611 EMAGE:21611 EMAGE:21611
euxassay_004321_20 euxassay_004321_21 euxassay_004321_22 euxassay_004321_23 euxassay_004321_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21611Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21611_wholemount_strong.wlz
21611_wholemount_moderate.wlz
21611_wholemount_weak.wlz
21611_wholemount_possible.wlz
21611_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21611_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5881
Entity Detected:Akr1a1, aldo-keto reductase family 1, member A1 (aldehyde reductase) ( MGI:1929955)
Sequence:sense strand is shown

>T5881
CCACGCGTCCGCGGCCCTTCCAGACGTTCGTGGTGGAGTGAGAGGTTCCCAGAGGAGGAATGTGCAAAGT
CCCAGCTTTGGCTTCTACTCCCTCTTCTACTTCGCAGGACAGTGGGGGTCTCCTCCGTCCTGCGCGTAGT
TCTGGGAGCCGGGCCCTCGCTCCTCCCTGGGGTGGGGCTGCCGCTTCTCCGCCGGACTTAAGTCGGGCCC
TGTTGCCTCAGTACTGGAGTGCAGAGCTGAATTCGGGCCACTTTGTCTTTTCCACAGCCTGTGCTCACTG
CCAAGGGGACAATGACGGCCTCCAGTGTCCTCCTGCACACTGGACAGAAGATGCCTCTGATTGGTCTGGG
GACATGGAAGAGTGAGCCTGGTCAGGTGAAAGCAGCCATTAAACATGCCCTTAGCGCAGGCTACCGCCAC
ATTGATTGTGCTTCTGTATATGGCAATGAAACTGAGATTGGGGAGGCCCTGAAGGAGAGTGTGGGGTCAG
GCAAGGCAGTCCCTCGAGAGGAGCTGTTTGTGACATCCAAGCTGTGGAATACTAAGCACCACCCTGAGGA
TGTAGAACCTGCCCTCCGGAAGACACTGGCTGATCTGCAACTGGAGTATTTGGACCTCTATTTGATGCAC
TGGCCTTATGCCTTTGAGCGGGGAGACAATCCCTTTCCCAAGAATGCCGATGGAACTGTCAGATATGACT
CAACTCACTATAAAGAGACCTGGAAGGCTCTGGAGGTACTGGTGGCAAAGGGGCTGGTGAAAGCCCTGGG
CTTGTCCAACTTCAACAGTCGGCAGATTGATGATGTCCTCAGTGTGGCCTCTGTGCGCCCAGCTGTCTTG
CAGGTGGAATGCCATCCATACCTGGCTCAGAATGAGCTCATTGCCCACTGTCACGCACGGGGCTTGGAGG
TGACTGCTTATAGCCCCTTGGGTTCCTCTGACCGTGCTTGGCGCCATCCTGATGAGCCAGTCCTGCTTGA
AGAACCAGTAGTCTTGGCACTAGCTGAAAAACATGGCCGATCTCCAGCTCAGATCTTGCTTAGATGGCAG
GTTCAGCGGAAAGTGATCTGCATCCCCAAAAGCATCAATCCTTCCCGCATCCTTCAGAACATTCAGGTAT
TTGATTTCACCTTTAGCCCAGAGGAGATGAAACAATTAGATGCTCTGAACAAAAATTGGCGGTATATTGT
GCCCATGATTACGGTGGATGGGAAGAGGGTTCCCAGAGATGCTGGACACCCTCTGTATCCCTTTAATGAC
CCATACTGAGACCTATAGTTTCTCAGCTTCCCTTTCAGTTCTCCTGCTAAGCATTGCCTGCTACTCCCCA
GAAAGAAGGAATCAATAAAGCCATTGAAGTGTAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3156658 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3156658 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_004321 same experiment
 EMAGE:21607 same embryo
 EMAGE:21610 same embryo
 EMAGE:21612 same embryo
 EMAGE:21609 same embryo
 EMAGE:21608 same embryo
 EMAGE:21606 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS