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EMAGE:21609

Lamtor3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 ( MGI:1929467)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21609 EMAGE:21609 EMAGE:21609 EMAGE:21609 EMAGE:21609
euxassay_004334_01 euxassay_004334_03 euxassay_004334_04 euxassay_004334_05 euxassay_004334_06
EMAGE:21609 EMAGE:21609 EMAGE:21609 EMAGE:21609 EMAGE:21609
euxassay_004334_07 euxassay_004334_08 euxassay_004334_09 euxassay_004334_10 euxassay_004334_11
EMAGE:21609 EMAGE:21609 EMAGE:21609 EMAGE:21609 EMAGE:21609
euxassay_004334_12 euxassay_004334_13 euxassay_004334_14 euxassay_004334_15 euxassay_004334_16
EMAGE:21609 EMAGE:21609 EMAGE:21609 EMAGE:21609 EMAGE:21609
euxassay_004334_17 euxassay_004334_18 euxassay_004334_19 euxassay_004334_20 euxassay_004334_21
EMAGE:21609
euxassay_004334_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21609Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21609_wholemount_strong.wlz
21609_wholemount_moderate.wlz
21609_wholemount_weak.wlz
21609_wholemount_possible.wlz
21609_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21609_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5911
Entity Detected:Lamtor3, late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 ( MGI:1929467)
Sequence:sense strand is shown

>T5911
AGCGACTTGACAGGCGGCTTCAGAGAGGCGACTGAACTGCGGGAACACCGGGGCAGGTCTTCCCAGGCTG
GAGCGCGCGTGCGTCTGCAGAGGAGTGGAGATCGATTCTGCGAGGAAAAGGGGTTCATCATGGCGGATGA
TCTAAAGCGATTCCTGTACAAAAAGTTGCCAAGTGTTGAAGGGCTCCATGCAATTGTTGTGTCAGATAGA
GACGGGGTGCCGGTTATTAAAGTGGCTAACGACAGTGCCCCAGAGCACGCCCTGAGACCTGGCTTCCTAT
CCACGTTTGCCCTCGCAACAGACCAAGGCAGCAAACTCGGACTTTCAAAAAACAAAAGCATCATCTGCTA
CTATAACACCTACCAGGTGGTTCAGTTCAATCGTTTGCCTCTGGTGGTGAGTTTCATAGCCAGCAGCAGT
GCCAACACAGGACTAATTGTCAGCCTAGAAAAGGAGCTAGCTCCATTATTTGAAGAACTGATAAAAGTTG
TGGAAGTGTCTTAATCCAGCAGTGGTTCTGATGCACACCTGGGCCTCACTGCAGCAACCCTGGACCGGGC
CAGCAACCTTCAGACCACAATAGTACTTGTAGCTATGTATTCAGAAGGCCGCTTTTCCACATTACACTAA
AGAAGAACCTATCGCTATAATTTATAGACAGATCAATTGTTATATTTATGTGTATAAAATCTTTTCTTAC
TTAGTGAGGTCTGAGAACACCACAGAAATGGTCATTCGATTGCTGCTCCCATGGAGTTAGTGCAGGCACC
TGAAAGTGAGTGGTATCTGTCCAGAGCAGAGGGTCAGACCGGGACCGTGAGGCCCTTGAGCCAGCAGGCA
CACCTGCTGAACTCTGCTCCACTCCATAAGCCGCAGACCCTTTTACTGAGAATAATAATGAGGTCATATT
TTTCTTCAGATTATATTTTATTTCTTCGCATTGTGAGGAAGATGAAATGGCTTAGTAAAAATAATTAAGT
ACAATCACTAACGCCCCCTCTGTGTTCTCGGTGAGGATGAGTTACTAATGGATTTGATTTTCAGGGTGCT
GCTGTTCACTGAGAGCACAATCACTGCTTATGATGTCTCTCCGCGTTGCTGTAACCGTGCTTCCACCATT
GTGTTCTTTGTACAATTGAAATGCATGTTACTGAGTTCTGTTTCCTTATCAGGATGTATATAAAATGACA
GGATGGCCATTTTTTATACATGTGTATAAATAAAATAGTATTTTTAAAGGTACCGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3158151 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3158151 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_004334 same experiment
 EMAGE:21607 same embryo
 EMAGE:21611 same embryo
 EMAGE:21610 same embryo
 EMAGE:21612 same embryo
 EMAGE:21608 same embryo
 EMAGE:21606 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS