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EMAGE:29537

Cd4 ( MGI:88335)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:29537
euxassay_003363_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6737
Entity Detected:Cd4, ( MGI:88335)
Sequence:sense strand is shown

>T6737
GAAGGCAAAGCAAGACTCTCTTCTTCACTAGGTACCTGTTTGCAAAGTCTCGAGCCCTCATATACACACA
CCTGTGCAAGAAGCAGAGTGAAGGAAGGACTGGCCAGAGGCTCAGATTCCCAACCAACAAGAGCTCAAGG
AGACCACCATGTGCCGAGCCATCTCTCTTAGGCGCTTGCTGCTGCTGCTGCTGCAGCTGTCACAACTCCT
AGCTGTCACTCAAGGGAAGACGCTGGTGCTGGGGAAGGAAGGGGAATCAGCAGAACTGCCCTGCGAGAGT
TCCCAGAAGAAGATCACAGTCTTCACCTGGAAGTTCTCTGACCAGAGGAAGATTCTGGGGCAGCATGGCA
AAGGTGTATTAATTAGAGGAGGTTCGCCTTCGCAGTTTGATCGTTTTGATTCCAAAAAAGGGGCATGGGA
GAAAGGATCGTTTCCTCTCATCATCAATAAACTTAAGATGGAAGACTCTCAGACTTATATCTGTGAGCTG
GAGAACAGGAAAGAGGAGGTGGAGTTGTGGGTGTTCAAAGTGACCTTCAGTCCGGGTACCAGCCTGTTGC
AAGGGCAGAGCCTGACCCTGACCTTGGATAGCAACTCTAAGGTCTCTAACCCCTTGACAGAGTGCAAACA
CAAAAAGGGTAAAGTTGTCAGTGGTTCCAAAGTTCTCTCCATGTCCAACCTAAGGGTTCAGGACAGCGAC
TTCTGGAACTGCACCGTGACCCTGGACCAGAAAAAGAACTGGTTCGGCATGACACTCTCAGTGCTGGGTT
TTCAGAGCACAGCTATCACGGCCTATAAGAGTGAGGGAGAGTCAGCGGAGTTCTCCTTCCCACTCAACTT
TGCAGAGGAAAACGGGTGGGGAGAGCTGATGTGGAAGGCAGAGAAGGATTCTTTCTTCCAGCCCTGGATC
TCCTTCTCCATAAAGAACAAAGAGGTGTCCGTACAAAAGTCCACCAAAGACCTCAAGCTCCAGCTGAAGG
AAACGCTCCCACTCACCCTCAAGATACCCCAGGTCTCGCTTCAGTTTGCTGGTTCTGGCAACCTGACTCT
GACTCTGGACAAAGGGACACTGCATCAGGAAGTGAACCTGGTGGTGATGAAAGTGGCTCAGCTCAACAAT
ACTTTGACCTGTGAGGTGATGGGACCTACCTCTCCCAAGATGAGACTGACCCTGAAGCAGGAGAACCAGG
AGGCCAGGGTCTCTGAGGAGCAGAAAGTAGTTCAAGTGGTGGCCCCTGAGACAGGGCTGTGGCAGTGTCT
ACTGAGTGAAGGTGATAAGGTCAAGATGGACTCCAGGATCCAGGTTTTATCCAGAGGGGTGAACCAGACA
GTGTTCCTGGCTTGCGTGCTGGGTGGCTCCTTCGGCTTTCTGGGTTTCCTTGGGCTCTGCATCCTCTGCT
GTGTCAGGTGCCGGCACCAACAGCGCCAGGCAGCACGAATGTCTCAGATCAAGAGGCTCCTCAGTGAGAA
GAAGACCTGCCAGTGCCCCCACCGGATGCAGAAGAGCCATAATCTCATCTGAGGCCTAGGCCCCACCTGC
AGCCCACCACCTGCGTCCTGTCTCATCGCCCGAGGCCTGGGGACCAGATGAATGTAGCAGACACGCTGCC
TCCGGCCTTCTGCTCTCCTCTTCCACAACCGGCCACGGTTTCCCTCCCTCTGTTCCCAAGCCTGTCTGTC
TGCAGAGCTTGCCCTCTGCGTTTCAGACACTCAAGCACACCCCATCAGCTTATTTATTCTTCGCTGCTGC
CTTTCTGCCAGAGCCTCGGCCCTTCTCGGACTAAGGTCCTGGAACCTTTTTCCAGCTGTCTGCTTGGATC
AAAGGGCAGTGTATAGCACCTGGCACGGATGGTGGGACTGGTGTCTGGAAATACACAGCACAGTTTACGA
GAGGGCTCTGGGACCAAGCTGAGTGGGGCAGGGAGGGCCGGGAGGTTGTGCATGTCACACATGAAGCATG
TCAGGGGCAAATGAAGACTGAGAGGCTGCGGGAGTCAGCCTCAGCTTCCCATGATGCCTGCTTCTCTTTT
GAATTTGCAAGACCAGACTCACATTCTAACCAGTGCACCAACACACATCCAAGCCACACACCTGTCCATA
TATCCAAACAGCATATCTTAATTCATAAGCCACTTTAATGTCCCAGGCATTCGACCCTTACAAAAACCTT
ACAAGTGGATGAGCGGTAAAAAGCCTCATGAACTGAGTGGAAGGAGAGGATTAACTCTTGAAAGTTGTCC
CCTATGTATGTACCATGACCCTCATGTGTACACAACACACACACACACACACACACATACACACACGAAC
ACACGCATGTTGCACACATGCATGCACGCTGAAATCCTACAAGCTGACAGTGATGACTAAGATGGCAGAG
ATAACCAGTCATCCCTAGTGAAATGGAACTTGGTTGAATGACTACCCAAGGTTACCCAGCTAACAAGTGC
TGATGTCAGGGCCAACCCAGGGCTCCTGATCCCTAGAGCCAAGCCACTACATGGAACACAGGGATGAATA
CCACACAGATCTCTGGAGCTAGTTCCAGGCCCTCGGTATACACACACACACACACACACACACACACTGG
AGCGCAGCCCCTGGCAGAGATCTTGAGAGGATGGAGGAGCCATTCTGGTTTCAAATCCCTCCTTGATCAC
TGCTGTTCTCACCCCCCCCTCCTTCCCCCAAAACCCTAGTTCTCTTAGAGTGAGGCTGGGAGAGATGCAC
AGAGACCTGCCGCAGTGTGTGCAGAGCCTGGGAAGTGGACCATGCTGGGGTCCTTTATGGAGAGAGCATT
GTGGCAGGTGGCTGTGCCTTCCATCCAGGAGGTCAGGGGTCTAAGGGCTCTCCCTGAGAGTCTTGATCTG
TTTCTCATAGATCCACAGCCTCCTCTGCCTCTGTCGTTTGCCTGCTTCAGCACTTCCTTCCCCTTTTTTC
CTCTTTTCTTCCCAGCTGGCCTCTTCTAGAAACATCCCTTCCCCACTTCTCTTCATTATTCACTTCTTAT
TTTTGCCCACTCCCCACTCCTGCTTCCTGAGCTGACAGAAAAATAAAGGCTATAAATAAAAAAAAAAAAA
AA
Notes:The probe template was PCR amplified from IMAGE:3670597 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3670597 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_003363 same experiment
 EMAGE:29879 same embryo
 EMAGE:32176 same embryo
 EMAGE:29532 same embryo
 EMAGE:31379 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS