EMAGE mouse gene expression spatial database

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EMAGE:30410

Oplah ( MGI:1922725)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


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View assay images:
Expression pattern clarity:

Expression Pattern Description

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T7472
Entity Detected:	Oplah, ( MGI:1922725)
Sequence:	sense strand is shown >T7472 GATTCGGCTGCTGGTGGGTTCTCCCAGGGCTACCAGCCGAAGAGCCACTGCTGGACTCCAGCTTCAACAT CATGGGCAGCCCAGAAGAGCGCTTCCATTTTGCCATCGACCGTGGTGGCACCTTTACAGATGTCTTTGCC CAGTGCCCAGGAGGGCATGTACGTGTCCTGAAGCTGCTCTCAGAGGATCCTGCCAACTATGCAGACGCAC CCACAGAGGGCATCCGCCGAATTCTAGAGCAGGAGAGGGGTGTGCTGCTGCCCCGAGGCCGGCCGCTAGA CACCAGTCACATCGCCAGCATCCGCATGGGTACCACCGTGGCCACCAATGCTCTGTTGGAACGGCAGGGA GAACGGGTGGCACTGCTGGTGACTCGCGGTTTCCGAGACCTGCTGCATATTGGCACTCAGGCCCGCCCAG ACCTCTTTGACCTGGCTGTGCCCATGCCAGAGGTACTGTATGAGGAGGTCGTGGAGGTGGACGAGCGAGT GCTGCTGTATCGTGGAGAACCCGGTGCCGGCTCTCCCGTCAAAGGCTGTACAGGGGACCTGCTAGAGATA CAGCAGCCTGTGGATCTGGCAGCCCTGCGTGGGAAGCTGGAGGGGCTCTTGACTCGGGGCATTCACAGCC TGGCAGTGGTACTCATGCATTCGTACACGTGGGCCCAGCACGAGCAGCAGGTGGGCACACTGGCCCGGGA GCTGGGCTTCACGCACGTCTCCTTGTCCTCGGAAGTCATGCCCATGGTGCGGATTGTTCCTCGGGGGCAT ACGGCCTGTGCAGATGCTTACCTCACTCCCACCATCCAGCGCTATGTGCAGGGCTTCCGCCGAGGCTTCC AGGGCCAGCTAAAGAATGTGCAAGTCCTCTTCATGCGCTCCGATGGTGGCCTGGCACCCATGGATGCCTT CAGTGGCTCCCGGGCTGTGCTCTCTGGCCCTGCTGGTGGTGTGGTTGGCTACTCCACTACCACCTACCAG CTGGAAGGTGGTCAGCCTGTCATTGGCTTTGACATGGGAGGCACATCCACAGATGTGAGCCGCTATGCTG GAGAGTTTGAGCATGTCTTTGAGGCTAGCACGGCAGGTGTTACCCTCCAGGCCCCACAGCTGGACATCAA TACGGTGGCAGCTGGCGGGGGTTCCCGCCTCTTCTTCAGGTCTGGCCTCTTTGTGGTTGGTCCAGAGTCA GCAGGTGCCCACCCAGGTCCTGCCTGCTACCGCAAAGGGGGTCCTGTGACAGTGACAGATGCTAATCTGG TTCTGGGTCGCCTGCTGCCTGCCTCCTTCCCCTGCATTTTTGGGCCAGGAGAAGACCAGCCATTGTCTCC CGAGGCTTCCCGAAAGGCTCTAGAGGCTGTGGCCATGGAGGTCAACAGTTTCTTGGCCAGTGGACCCTGC CCAGCTTCCCAGCTAAGTCTGGAGGAGGTGGCCATGGGGTTTGTGCGTGTTGCCAACGAAGCCATGTGCC GGCCTATCCGTGCCCTCACACAGGCACGAGGCCACGACCCCTCAGCCCATGTACTGGCTTGCTTTGGAGG AGCCGGTGGGCAACACGCTTGTGCCATTGCCCGGGCCCTGGGTATGGACACTGTGCATATTCACAGGCAC AGCGGGCTGCTGTCAGCACTGGGACTGGCCTTGGCCGATGTGGTTCACGAAGCACAGGAGCCCTGTTCCC TGTCTTACACACCTGAAACCTTTGCACAACTGGACCAGAGACTGAGCCGCCTGGAGGAGCAGTGTGTGGA TGCCCTGCAGGCCCAGGGCTTCTCTAGGTCTCAGATCAGCACCGAGAGCTTCCTGCACCTTCGCTACCAA GGCACTGACTGTGCCCTAATGGTGTCTGCCAATCAGCATCCGGCCACAACCTGCTCACCCCGTGCTGGTG ACTTTGGAGCAGCGTTTGTCGAGAGGTACATGAGAGAGTTTGGCTTCATCATTCCTGAGCGCTCGGTGGT GGTAGATGATGTGCGTGTGAGGGGAACTGGCCGTAGTGGACTTCAGCTGGAGGAGACCTCCAAAATCCAG AGTGGACCTCCGCATGTGGAAAAGGTGACCCAGTGCTACTTTGAAGGGGGTTATCAGGAGACTCCCGTGT ACCTTTTAGGAGAACTAGGCTACGGGCATCAGCTTCAAGGGCCCTGCCTGATCATTGACAACAACAGCAC CATCCTTGTAGAACCAGGTTGCCAAGCGGAGGTGATTGAGACAGGGGACATCCGCATTTCTGTGGGAGCC GAGGCTCCCAGTATGATAGACACCAAGCTTGACCCCATCCAGTTGTCTATTTTCTCACACCGTTTCATGA GCATTGCTGAGCAGATGGGCCGCATCCTACAGCGCACAGCCATCTCTACCAACATCAAGGAACGCCTCGA CTTCTCCTGTGCCCTCTTTGGGCCAGATGGGGGCCTCGTCTCCAATGCTCCCCACATTCCTGTGCACCTG GGTGCCATGCAAGAGACTGTACAGTTCCAGATTCAGCACTTAGGAGCCGACCTCCATCCTGGTGATGTGT TGCTTAGTAACCATCCCAGTGCAGGGGGCAGCCATCTTCCTGACCTGACTGTCATCACACCGGTGTTTTG GCCAGGTCAGTCGAGGCCTGTGTTCTACGTGGCTAGCCGAGGGCACCACGCGGACATTGGAGGTATCACC CCGGGTTCTATGCCTCCTCACTCTACCACACTGCAGCAGGAGGGTGCCGTTTTTCTGTCCTTCAAACTGG TCCAGGGAGGAGTCTTCCAGGAAGAGGCGGTGACAGAGGCCTTACAGGCCCCAGGCAAGATCTCTGGCTG CAGTGGGACCAGGAACCTGCATGACAACCTGTCGGATCTCCGTGCCCAGGTGGCAGCTAACCAGAAAGGC ATCCAGCTGGTGGGAGAGCTGATCGGACAGTATGGCTTAGATGTGGTGCAGGCCTATATGGGCCATATTC AGGCAAATGCTGAACTAGCAGTGCGAGACATGCTTCGTGCTTTTGGAACTTCCCGCCAGGCCAGGGGCCT GCCCCTGGAGGTGTCTGCCAAGGATCACATGGACGATGGCTCTCCCATCTGCCTGCATGTTCAGATCAAC CTGAATCAGGGCAGCGCTGTATTTGACTTCAGTGGTTCTGGGTCTGAGGTGTTTGGCAATCTCAATGCCC CTCGAGCCATAACACTGTCTGCTCTCATCTATTGCTTGCGCTGTCTAGTGGGCCGTGACATCCCACTTAA CCAGGGTTGCCTGGCTCCTGTGCAAGTCATAATTCCCAAAGGCTCCATATTGGATCCATCCCCAGAGGCA GCAGTGGTCGGAGGCAACGTGCTCACATCTCAGCGAGTCGTGGATGTCATCCTGGGGGCTTTTGGGGCCT GTGCAGCCTCCCAGGGCTGCATGAACAATGTGACCCTGGGCAATGCCCGTATGGGCTACTATGAGACAGT AGCTGGTGGTGCGGGTGCAGGCCCTGGCTGGCATGGGCGCAGTGGTGTACACAGTCACATGACCAACACG CGCATTACGGACCCAGAGATTTTGGAGAGCCGGTATCCAGTTATCCTGCGCCGCTTTGAGCTGAGGCCAG GCTCTGGAGGCCGAGGCCGCTTCCGGGGAGGTGATGGCGTAGTCCGAGAGCTGGTCTTTCGGGAAGAGGC GCTACTGTCTGTCCTCACGGAGCGCCGCGCCTTCCAGCCTTATGGCCTCCACGGGGGAGAGCCTGGTACA CGTGGCTTAAACCTCCTGATCAGAAAAGATGGGCGCACAGTGAATCTGGGCGGCAAGACATCCGTGACTG TGTATCCCGGGGACGCGTTCTGCCTCCACACGCCTGGGGGTGGGGGCTATGGAGACCCGGAGGACCCAGC ACCACCACCAGGCTCGCCCCCGCTATATCCAGCCTTCCCAGAGCGAGGCAGTGTGTATGAGTACCGCCGC GCCCAGGAAGCAGTATGAGTGCCCCCACAATAAAGATCCTTTGAGTCGCAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:4236444 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4236444 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_005052 same experiment
	EMAGE:30593 same embryo
	EMAGE:31032 same embryo
	EMAGE:30408 same embryo
	EMAGE:31852 same embryo
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source