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EMAGE:31018

1110020A09Rik ( MGI:1915068)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31018 EMAGE:31018 EMAGE:31018 EMAGE:31018 EMAGE:31018
euxassay_004905_01 euxassay_004905_02 euxassay_004905_03 euxassay_004905_04 euxassay_004905_05
EMAGE:31018 EMAGE:31018 EMAGE:31018 EMAGE:31018 EMAGE:31018
euxassay_004905_06 euxassay_004905_07 euxassay_004905_08 euxassay_004905_09 euxassay_004905_10
EMAGE:31018 EMAGE:31018 EMAGE:31018 EMAGE:31018 EMAGE:31018
euxassay_004905_11 euxassay_004905_12 euxassay_004905_13 euxassay_004905_14 euxassay_004905_15
EMAGE:31018 EMAGE:31018 EMAGE:31018 EMAGE:31018 EMAGE:31018
euxassay_004905_16 euxassay_004905_17 euxassay_004905_18 euxassay_004905_19 euxassay_004905_20
EMAGE:31018 EMAGE:31018 EMAGE:31018 EMAGE:31018
euxassay_004905_21 euxassay_004905_22 euxassay_004905_23 euxassay_004905_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
metanephros
moderate moderate
regionalmoderate expression: see section 07 08 09 15 16 17
bladder
strong strong
regionalstrong expression: see section 10 11 12 13 14
pharyngo-tympanic tube
moderate moderate
regionalmoderate expression: see section 01 02 03 04 21 22 23 24 weak expression: see section 20
vertebral axis musculature
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
thymus primordium
strong strong
regionalstrong expression: see section 13 moderate expression: see section 10 11 12
trigeminal v ganglion
moderate moderate
regionalmoderate expression: see section 04 05 06 07 16 17 18 19
lateral ventricle
moderate moderate
regionalmoderate expression: see section 14
nasal cavity respiratory epithelium
moderate moderate
regionalmoderate expression: see section 11 12 13 14 15 16 17
vibrissa
moderate moderate
regionalmoderate expression: see section 05 06 07 18 19 20 weak expression: see section 04
telencephalon ventricular layer
moderate moderate
regionalmoderate expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23
midbrain ventricular layer
moderate moderate
regionalmoderate expression: see section 09 10 11 12 13 14 15 weak expression: see section 08
nasal cavity olfactory epithelium
moderate moderate
regionalmoderate expression: see section 08 09 10 11 12 13 14 15 16 17 18
telencephalon mantle layer
moderate moderate
regionalmoderate expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 15 16 17 18 19 20 21 22 23
4th ventricle
moderate moderate
regionalmoderate expression: see section 09 10 11 12 13 14 15 weak expression: see section 08
orbito-sphenoid
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 19 20 21 22 23
stomach
moderate moderate
regionalmoderate expression: see section 02 03 04 05 06 07 08
urethra of male
strong strong
regionalstrong expression: see section 13
midgut
moderate moderate
regionalmoderate expression: see section 05 06 07 08 09 10 11 12 13 14 15 16
thyroid gland
strong strong
regionalstrong expression: see section 13 14 moderate expression: see section 09 10
adenohypophysis
moderate moderate
regionalmoderate expression: see section 10 11 12 13 14
submandibular gland primordium
strong strong
regionalstrong expression: see section 07 08 15 16 17
adrenal gland
moderate moderate
regionalmoderate expression: see section 07 08 09 15 16
liver
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
lung
moderate moderate
regionalmoderate expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20
diencephalon lateral wall ventricular layer
moderate moderate
regionalmoderate expression: see section 13
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6906
Entity Detected:1110020A09Rik, ( MGI:1915068)
Sequence:sense strand is shown

>T6906
CTTGGCCGCAGCTGGAAACTGACCGCCACCTTCTCCAACTCGCAGCATGCTGTTGGGGTTGGGCGGCCGG
TGGGCAGCGGGCCTATGGCCGGGCCGGACGAGGACGACGTGGTGTGTGGCCGCCGCGCTCCGAGGTTCCG
GGATCGCTTTCTGGCGTGCGGCCTCGCTAGCCGAGCCAGAGCGGCTGCGGAGCGGCGGGCATCTAGCGCT
AGCCGAGTCTTGCGGGCCACCCGGGCGAGCGCAGATACCTGTTTGTTGGGAACGATGTGTCCGCTGCTTC
CATACACAAGTTGATAAGCCAGAAAATGGCAGGCTGATTTATACTGGAAACCTGGCCCGAACGATATTTG
GTGTGAAATGTTTCTCTTATTCTACAAGTGTTGTCAGCCTTGCATTCTTGCCGTACCTTCTCTCACAAAA
TAACATGATGTTTGGAAGTCTGCCTTTGCAAGTCTTATTTTACGGAGTCATGGGAAGCTTCACAGTGATC
ACTCCCACGCTGCTTCACCTTCTTACAAAAGGCTATGTCATTCGGTTGTATCATGAAGCCACAAGTGACA
CTTACAGAGCTGTCACTTACAATGTTATGCTTTCGGAAACCAGCACAGTGTTTCACCAAGACGACGTGAC
AATTCCAGAGAGCGCACATATATTCACCAGCTTTTATGCTAAAACAAAATCGCTATTAGTTAATCCAGCA
CTCTTTTTAAACCCTGAAGACTATAACCATCTAATGGGTTATGACAAACCGTTCACTTTTGATATGGAAG
AAGTCGCTGAAAAGAAACTGCATGAGGGTGAAAAATGAAAAGCCTCTTCATTTGTGCTTAAATGTCATGT
CAGTTCAGGGTATAATAAGATTGGCTTTATTTTGTTATTGTTAGTTAATGATTGTAGAAACAAAACAAAA
CAAACAAAAAAGTGTAAGGGCTGAGGACACAGCAATTGGCACTGTGTTTGCTGATGTGAGGCCCTAGAAT
TGGCCTTCATAGAAGCAGGATGCTTTTGTACACTTAGAATCCCAGCACATGGGACAGCGAGTTAGGAAGA
TTAGAAATCTGAGGTCATCCTTGGTAATGTAGTAGGTTTGAGGTTAGCCTGGACCTTGTCTTAAAAACAG
AAGTTGAAACTATCAAGCAGAATTTTTGAAAAATTTTTACATGACAATGTTCCTATGTAATAAAATATGT
TTAAATTAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3979025 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3979025 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_004905 same experiment
 EMAGE:30968 same embryo
 EMAGE:30206 same embryo
 EMAGE:30130 same embryo
 EMAGE:30062 same embryo
 EMAGE:31016 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS