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EMAGE:31258

Atp6v1d ( MGI:1921084)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31258 EMAGE:31258 EMAGE:31258 EMAGE:31258 EMAGE:31258
euxassay_003760_01 euxassay_003760_02 euxassay_003760_03 euxassay_003760_04 euxassay_003760_05
EMAGE:31258 EMAGE:31258 EMAGE:31258 EMAGE:31258 EMAGE:31258
euxassay_003760_06 euxassay_003760_07 euxassay_003760_08 euxassay_003760_09 euxassay_003760_10
EMAGE:31258 EMAGE:31258 EMAGE:31258 EMAGE:31258 EMAGE:31258
euxassay_003760_11 euxassay_003760_12 euxassay_003760_13 euxassay_003760_14 euxassay_003760_15
EMAGE:31258 EMAGE:31258 EMAGE:31258 EMAGE:31258 EMAGE:31258
euxassay_003760_16 euxassay_003760_17 euxassay_003760_18 euxassay_003760_19 euxassay_003760_20
EMAGE:31258 EMAGE:31258 EMAGE:31258
euxassay_003760_21 euxassay_003760_22 euxassay_003760_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
dorsal root ganglion
moderate moderate
regionalmoderate expression: see section 04 05 06 07 08 09 10 13 14 15 16
facial vii ganglion
moderate moderate
regionalmoderate expression: see section 03 04 05 19
not examined not examined
regionalnot examined expression: see section 01 02 03 04 21 22 23
neural retina
weak weak
regionalweak expression: see section 01 02 03 04 22 23
vagus x ganglion
moderate moderate
regionalmoderate expression: see section 06 07 15
trigeminal v ganglion
moderate moderate
regionalmoderate expression: see section 03 04 05 06 07 08 15 16 17 18 19 20
vibrissa
moderate moderate
regionalmoderate expression: see section 06 07 08 20
vestibulocochlear viii ganglion
moderate moderate
regionalmoderate expression: see section 05 06
glossopharyngeal ix ganglion
moderate moderate
regionalmoderate expression: see section 05 16
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6999
Entity Detected:Atp6v1d, ( MGI:1921084)
Sequence:sense strand is shown

>T6999
CGATTGTCTCGCCGGGGGGCCCGAGCCGAGTCACCGTCAGGATGTCGGGCAAAGACCGGATTGAAATCTT
CCCTTCGCGAATGGCACAGACCATCATGAAGGCTCGATTAAAAGGAGCACAGACTGGTCGAAACCTTCTG
AAGAAAAAGTCTGATGCCTTAACTCTTCGATTTCGACAGATCCTGAAGAAGATAATAGAGACTAAAATGC
TGATGGGTGAAGTGATGAGAGAAGCTGCCTTCTCATTGGCTGAGGCCAAATTCACAGCAGGGGACTTCAG
CACCACAGTTATCCAAAATGTAAATAAAGCCCAAGTGAAGATCAGAGCAAAGAAAGACAATGTAGCAGGT
GTTACCTTGCCAGTGTTTGAACATTACCACGAAGGAACTGACAGCTATGAACTGACCGGTTTAGCCAGAG
GTGGGGAGCAGCTGGCTAAACTAAAGCGGAATTATGCCAAAGCAGTGGAACTACTGGTGGAACTGGCTTC
CCTGCAGACTTCCTTTGTTACCCTGGATGAAGCCATTAAAATCACCAACAGGCGTGTTAATGCCATTGAG
CATGTCATTATTCCCCGGATTGAACGCACCCTTGCCTATATCATCACAGAACTGGATGAGAGAGAGCGAG
AAGAATTCTATAGGTTAAAGAAAATACAGGAGAAGAAAAAGATTATCAAGGAAAAATTTGAGAAGGACTT
GGAGCGGCGGAGAGCAGCTGGAGAGGTGATGGAGCCTGCCAACCTGCTGGCTGAAGAGAAGGACGAGGAC
CTGCTGTTCGAATAGCTGCCCTCGTCTGCTCCCTTCAGAATGAACATCAGCTTCATGTTAACTCAGTGTG
TAGGTTCGGTATGTGTGGATATTTATTTTGGCATATGAATTTCTCTGGCTGTAAGATTTATCAGAATGCC
TTGTAAGACTTTTTCCTGCATCATAATTCAGCAACCCGAGATTTGCAAAACCTGCCCAGCAACCTACAGA
ATTTCCTCTGTGAAAAGTGTCATATTATTCTATTTACAATTGTTTGACCGATCTGTTTAAAACTTTAGGA
AATATGTACTATAAACATTCATGGTCGCAGGCAAAGGCTGTGAGCAACCTTCCTTCCTACCCACTTGGAA
ACCTTGCCGCTGTTGTCCGAGGCTGTACAGCCATTGTGTTCCTATGGCTCAATTCTTCACCTATTTTTCT
TTGCACGGTATGTGTTTGTAATGGAAGCAGTTCTGCCCATTTAAATGTGACCTATGAACAGAGTAAAATG
ATTTTAAAAACAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3991107 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3991107 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_003760 same experiment
 EMAGE:31260 same embryo
 EMAGE:31192 same embryo
 EMAGE:31881 same embryo
 EMAGE:29424 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS