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EMAGE:31659

Cln2 ( MGI:1336194)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31659 EMAGE:31659 EMAGE:31659 EMAGE:31659 EMAGE:31659
euxassay_002620_01 euxassay_002620_02 euxassay_002620_03 euxassay_002620_04 euxassay_002620_05
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euxassay_002620_06 euxassay_002620_07 euxassay_002620_08 euxassay_002620_09 euxassay_002620_10
EMAGE:31659 EMAGE:31659 EMAGE:31659 EMAGE:31659 EMAGE:31659
euxassay_002620_11 euxassay_002620_12 euxassay_002620_13 euxassay_002620_14 euxassay_002620_15
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euxassay_002620_16 euxassay_002620_17 euxassay_002620_18

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
midbrain ventricular layer
strong strong
regionalstrong expression: see section 09 10 moderate expression: see section 08 11
medulla oblongata basal plate ventricular layer
strong strong
regionalstrong expression: see section 09 10
pons ventricular layer
strong strong
regionalstrong expression: see section 09 10 moderate expression: see section 08
spinal cord ventricular layer
strong strong
regionalstrong expression: see section 09 10
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5274
Entity Detected:Cln2, ( MGI:1336194)
Sequence:sense strand is shown

>T5274
CGGACGCGTGGGGAAAGCCAAAATGGGACTCCAAGCCCGCCTCCTAGGGCTCCTTGCTCTCGTCATCGCC
GGCAAATGCACTTACAACCCTGAGCCGGACCAGCGGTGGATGCTGCCTCCAGGCTGGGTGTCCCTGGGCC
GCGTGGATCCCGAGGAAGAGCTGAGTCTCACTTTTGCGCTGAAACAGCGGAACCTGGAAAGACTCTCGGA
GCTGGTGCAGGCTGTGTCGGATCCTAGCTCTCCTCAATATGGAAAGTACCTAACCCTGGAGGATGTAGCT
GAGCTGGTTCAACCATCACCCCTGACCCTCCTCACTGTCCAAAAGTGGCTCTCAGCAGCTGGAGCCCGGA
ACTGCGATTCAGTGACCACCCAGGACTTTCTGACTTGCTGGCTGAGTGTCCGACAGGCTGAGCTGCTGCT
CCCAGGAGCTGAGTTTCATCGCTATGTAGGGGGACCTACAAAGACCCATGTTATAAGGTCCCCACATCCC
TACCAGCTTCCCCAGGCCTTGGCCCCTCATGTGGATTTTGTGGGGGGGCTGCACCGTTTCCCCCCTTCAT
CTCCAAGACAACGTCCAGAACCACAACAGGTAGGAACTGTTAGCCTGCACTTGGGAGTGACTCCGTCTGT
GCTCCGTCAGCGATACAACCTGACAGCCAAAGATGTGGGCTCAGGCACCACCAACAATAGCCAGGCCTGT
GCCCAGTTCCTGGAACAGTACTTCCATAACTCGGATCTGACTGAGTTCATGCGCCTATTCGGTGGCAGTT
TTACACACCAGGCCTCAGTAGCAAAAGTTGTTGGAAAGCAAGGGCGAGGCCGAGCTGGGATCGAGGCCAG
TCTAGATGTGGAATACCTGATGAGTGCTGGTGCCAATATCTCCACTTGGGTCTACAGTAGCCCTGGCCGC
CATGAGGCACAGGAGCCCTTCTTACAATGGCTCCTGCTTCTTAGCAATGAGTCATCTTTGCCACATGTAC
ATACTGTGAGTTACGGAGACGATGAAGACTCCCTCAGCAGCATCTACATCCAGAGAGTCAACACTGAGTT
CATGAAGGCTGCTGCTCGGGGTCTCACCCTCCTTTTTGCCTCAGGTGACACTGGAGCTGGGTGTTGGTCT
GTCTCCGGAAGACACAAGTTCCGCCCTAGCTTCCCTGCTTCCAGCCCCTATGTTACTACAGTTGGAGGAA
CCTCCTTCAAGAATCCTTTCCTCATCACAGATGAAGTAGTTGACTATATCAGTGGTGGAGGCTTCAGCAA
TGTTTTCCCACGGCCTCCCTACCAGGAGGAAGCAGTGGCCCAGTTCTTGAAATCCAGCTCTCATCTACCA
CCATCCAGTTACTTCAATGCTAGTGGCCGTGCCTACCCAGATGTTGCCGCACTATCTGATGGCTACTGGG
TGGTCAGCAACATGGTCCCCATTCCATGGGTATCTGGAACCTCGGCCTCTACTCCAGTGTTTGGGGGAAT
TTTATCCTTGATAAATGAGCACAGAATCCTCAATGGCCGCCCTCCTCTTGGCTTTCTCAACCCCAGGCTC
TATCAGCAGCATGGGACAGGACTCTTTGATGTAACCCACGGCTGCCATGAGTCCTGTCTGAATGAAGAAG
TGGAGGGTCAGGGTTTCTGCTCTGGTCCTGGCTGGGATCCTGTGACAGGTTGGGGAACACCCAACTTCCC
AGCCCTACTGAAGACCCTGCTCAACCCTTGACCCTTTCGTGCCATGACGAGAAAGCAGAACTGTTCCCTG
TACTAAAAGGGAAGGCTCAGTTTCTTGTTATTCCTCGATAGAAGCCCTGCTGAACTCCTGTTGCCTGCTG
CAGATAGCTTCTCCCTAACCCTCAGATGCTGTGAACAGGACTCAACTCTCAATCCTACTGTGTGCCATCA
AACTCAGGTCTCCAAACTTCTACTTCAAGATCCTCAACAAGATGCTATAACCAGCATATTTTGTCTCACC
CCAACCCCATCTCTCCTTCCTCTTTCCAGCTTGAGATGTGAAAGCAGGGCAAGAAGGTTCAGTCTTCCAT
TACTGACACTAGCAGGTCCACCCAACGCTTACCACCTCTGCACTGACCGTACACTCTATTTCTCTTCGGG
TTTGCTTTTCCGTTCACTGAAGTGAGACCTTTGACTAATCGTTTTGTCTTTCTTCTCTCGGCACTGAAGT
ACAATGGTCTCCCCAATGTTTTATCCAGTTATACCCTTTTCAGTGTTTGTTTTATGGGTTTTCTTATTTA
AGAACAGGTTGTCAAAAAACCATTAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5360558 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5360558 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_002620 same experiment
 EMAGE:31686 same embryo
 EMAGE:31695 same embryo
 EMAGE:29689 same embryo
 EMAGE:29634 same embryo
 EMAGE:29633 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS