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EMAGE:6942

Srr serine racemase ( MGI:1351636)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:6942 EMAGE:6942 EMAGE:6942 EMAGE:6942 EMAGE:6942
"Pseudo-wholemount" of euxassay_004568. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004568_01 euxassay_004568_02 euxassay_004568_03 euxassay_004568_04
EMAGE:6942 EMAGE:6942 EMAGE:6942 EMAGE:6942 EMAGE:6942
euxassay_004568_05 euxassay_004568_06 euxassay_004568_07 euxassay_004568_08 euxassay_004568_09
EMAGE:6942 EMAGE:6942 EMAGE:6942 EMAGE:6942 EMAGE:6942
euxassay_004568_10 euxassay_004568_11 euxassay_004568_12 euxassay_004568_13 euxassay_004568_14
EMAGE:6942 EMAGE:6942 EMAGE:6942 EMAGE:6942 EMAGE:6942
euxassay_004568_15 euxassay_004568_16 euxassay_004568_17 euxassay_004568_18 euxassay_004568_19
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euxassay_004568_25 euxassay_004568_26

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:6942Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
6942_wholemount_strong.wlz
6942_wholemount_moderate.wlz
6942_wholemount_weak.wlz
6942_wholemount_possible.wlz
6942_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:6942_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7428
Entity Detected:Srr, serine racemase ( MGI:1351636)
Sequence:sense strand is shown

>T7428
CGGACGCGTGGGTCCAGCAGAGGCTCGGAGGTGGAGGCGCAGCGCTCTGGAGGCGAGTATTTCCTAAATG
ACCTTACACCCTTTGCCACACTGGTCCTGGGCCAAGATGGGCCAATCAAAGTCCTTACCCAGAATTTTTT
GAACTGAAATTGAGAGAGAATCCCTCTTCAGTATGGAAGCCATAAAATGTAAAACACAGGAGCTGTCAGC
AGCCATGTGTCCTGCAGTACGGAGCCAGCTGGTCTGCTGTGAGAAGGAAGCCGCCGTGCCAGAGGCAGCA
GAGAACCATGTGTGCTCAGTACTGCATCTCCTTTGCTGATGTTGAAAAAGCTCATATCAACATTCAAGAC
TCTATCCACCTCACCCCAGTGCTAACAAGCTCCATTTTGAATCAAATAGCAGGGCGCAATCTTTTCTTCA
AATGTGAGCTCTTCCAGAAAACTGGGTCTTTTAAGATTCGAGGTGCCCTTAATGCCATCAGAGGCTTAAT
TCCTGACACGCCAGAAGAGAAGCCCAAAGCCGTAGTTACTCACAGCAGCGGAAACCATGGCCAAGCTCTC
ACCTATGCTGCTAAACTGGAAGGAATTCCTGCTTACATTGTGGTTCCCCAAACAGCTCCCAACTGCAAGA
AACTGGCAATCCAAGCCTATGGAGCATCGATAGTATACTGTGACCCAAGTGACGAGTCCAGAGAAAAGGT
CACTCAAAGAATTATGCAAGAAACAGAAGGCATCTTGGTCCATCCCAACCAGGAGCCTGCAGTGATAGCT
GGACAAGGAACAATTGCCCTGGAAGTGCTGAACCAGGTTCCCTTGGTAGATGCACTGGTGGTACCAGTAG
GAGGAGGAGGAATGGTTGCTGGAATAGCCATTACAATTAAGGCCCTGAAACCTAGTGTGAAGGTATACGC
TGCTGAGCCCTCGAATGCAGATGACTGCTACCAGTCTAAACTGAAAGGAGAACTGACCCCCAATCTTCAT
CCTCCAGAAACCATAGCAGATGGTGTCAAATCCAGCATTGGCTTGAATACCTGGCCTATTATAAGAGACC
TTGTGGATGATGTCTTCACTGTCACCGAAGATGAAATCAAGTATGCAACCCAGCTGGTGTGGGGGAGAAT
GAAACTGCTCATTGAGCCGACTGCTGGCGTGGCACTGGCTGCAGTGCTGTCTCAGCATTTCCAAACAGTC
TCTCCAGAAGTAAAGAACGTCTGCATTGTACTCAGTGGGGGGAATGTAGACCTAACCTCCCTGAACTGGG
TGGGGCAGGCTGAACGGCCAGCTCCTTACCAGACGGTTTCTGTTTAAATTCAGGCAAGATTGTCTCTAGA
TGAAAATTTTGTTTCCATCTTCCCTTTAAAAATTATGTTCAAAATCCTAATGAAGAAAGTGTAAGTAAAA
AAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4195695 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4195695 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:6945 same embryo
 EMAGE:6943 same embryo
 EMAGE:6944 same embryo
 EurExpress:euxassay_004568 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS