EMAGE mouse gene expression spatial database

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EMAGE:7137

Abcd3 ATP-binding cassette, sub-family D (ALD), member 3 ( MGI:1349216)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_002679. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_002679_01	euxassay_002679_02	euxassay_002679_03	euxassay_002679_04

euxassay_002679_05	euxassay_002679_06	euxassay_002679_07	euxassay_002679_08	euxassay_002679_09

euxassay_002679_10	euxassay_002679_11	euxassay_002679_12	euxassay_002679_13	euxassay_002679_14

euxassay_002679_15	euxassay_002679_16	euxassay_002679_17	euxassay_002679_18	euxassay_002679_19

euxassay_002679_20	euxassay_002679_21	euxassay_002679_22	euxassay_002679_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7137_wholemount_strong.wlz

7137_wholemount_moderate.wlz

7137_wholemount_weak.wlz

7137_wholemount_possible.wlz

7137_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7137_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T5844
Entity Detected:	Abcd3, ATP-binding cassette, sub-family D (ALD), member 3 ( MGI:1349216)
Sequence:	sense strand is shown >T5844 GCTATCCTCCCAGTTTCCCCCGCGGTTCCTGCACTGAGGTTGTCGCCGGCGCGTCCCCTATCCCGCGGCT CGCTCGCCCTGCCGGTGCCATGGCGGCCTTCAGCAAGTACTTGACGGCACGGAACACCTCGCTGGCGGGG GCCGCGTTCCTGCTGCTCTGCCTACTCCATAAGCGGCGTCGCGCCCTCGGCCTGCACGGTAAGAAAAGTG GAAAACCGCCATTACAGAATAATGAGAAAGAAGGAAAGAAAGAGCGAGCTGTGGTGGACAAAGTGTTTTT ATCAAGGCTCTCACAGATCCTAAAAATTATGGTTCCTAGAACATTTTGTAAAGAGACAGGCTACTTGTTA CTTATTGCGGTTATGCTGGTATCTCGAACATACTGTGATGTTTGGATGATTCAGAATGGGACGCTCATTG AGAGTGGCATCATTGGTCGCAGCAGCAAAGATTTCAAGAGATACTTATTCAACTTCATCGCTGCCATGCC TCTTATCTCTCTGGTTAATAACTTCTTGAAGTATGGGTTAAATGAGCTCAAACTGTGCTTCCGAGTCAGG CTCACACGGTACCTCTACGAGGAGTATCTCCAAGCTTTCACCTATTATAAAATGGGCAACCTGGATAACA GAATAGCAAATCCAGACCAGCTGCTTACACAGGATGTAGAAAAATTTTGTAACAGTGTAGTCGATCTGTA TTCAAATCTTAGTAAGCCATTTTTAGACATAGTTTTATATATTTTCAAGTTAACAAGTGCAATTGGAGCT CAGGGCCCGGCAAGCATGATGGCCTACTTGCTTGTTTCTGGGCTATTCCTAACTCGACTCAGAAGACCCA TTGGTAAGATGACAATTATGGAGCAGAAGTACGAAGGAGAATACAGATACGTGAATTCACGCCTTATCAC TAATAGTGAAGAAATTGCCTTTTACAATGGGAATAAACGGGAGAAGCAGACAATCCACTCAGTCTTCCGA AAACTGGTGGAACACCTACATAATTTCATTTTCTTTCGGTTTTCTATGGGTTTCATTGATAGCATCATTG CCAAATATGTTGCCACTGTCGTCGGGTACTTGGTTGTCAGTCGCCCCTTCCTAGATCTGGCACACCCTCG CCACCTTCACAGCACACACTCAGAGCTGCTGGAGGATTACTACCAAAGTGGAAGAATGCTTTTGAGAATG TCTCAAGCTTTGGGTCGTATAGTTTTGGCTGGGCGTGAAATGACTAGATTGGCTGGTTTTACGGCTCGGA TTACAGAATTAATGCAAGTACTAAAGGACTTAAATCATGGCAGATATGAACGTACAATGGTGTCACAACA GGAGAAGGGCATTGAAGGAGCACAAGCTAGTCCCTTGGTCCCTGGTGCTGGAGAAATCATCAATACAGAC AACATTATAAAGTTTGATCATGTTCCTTTAGCAACACCAAATGGTGACATCTTGATCCAAGACCTTAGTT TTGAAGTTCGATCTGGGGCCAACGTTCTGATTTGTGGTCCAAACGGCTGTGGAAAGAGCTCCCTCTTCCG TGTTCTTGGTGAGTTGTGGCCTCTTTTTGGAGGGCGGCTTACTAAACCTGAGAGAGGAAAGTTATTTTAT GTTCCTCAGCGACCCTATATGACCCTGGGAACACTGAGAGACCAAGTCATATATCCAGATGGGAAGGAAG ATCAGAAGAAGAGGGGGGTCTCTGACCAGGTGCTGAAGGAGTACTTGGACAATGTGCAGCTGGGTCACAT CCTTGAGCGAGAAGGCGGCTGGGACAGTGTTCAGGACTGGATGGATGTACTCAGCGGAGGAGAGAAACAA AGAATGGCGATGGCAAGACTGTTTTATCATAAACCCCAGTTTGCCATTTTGGATGAATGCACAAGTGCGG TCAGTGTGGATGTGGAGGACTACATTTACAGCCACTGTCGAAAGGTTGGCATCACCCTCTTTACCGTTTC ACACAGAAAGTCCCTTTGGAAGCACCACGAGTACTACCTGCATATGGATGGGAGAGGCAATTATGAATTC AAAAAGATCACAGAAGATACAGTTGAGTTCGGATCATAGAGACCATCTCAAGAACTTCATTTGCTTCAAA ACAAGATAATGAACAGAATGCATTTGTAAATGCAAGATGCATTGTAAAATAAAGTTAAGCTTGTTTTTTT TTTTAAAAAAAACAAAGCAACAAATTGACTAGATATAGGATAATTGAAACATGTTAAAACATTTAATATT GTATAGGATATTGCTAATTGTGTATATGTTGGTTTAATTATTAATTATGTACTAAGAATGTCCTTATTCT TGTGGTTAAAAAACCTGCCTGAATTAAATTGGGCTTAAATCAGTGTAACCTGATTCATCCTGGGATGTAA ACCATTTGAAGTCAGCTAATTTGACTTTTATGGCTCTGTCTTTTTCTTTCATGAAGAACCCTGTTTAAAA CTGGGGTCATTAACTGTTCTATTCTAACAAAGTAGTCTTGAGTTTCATTTCTTATGCCCCATGGTAGTGG GAACCAGACCAATCACAATGTTTTATTGAAACATATTCCATCGTTACAGGATAGCGTTCGGTACACAGTG GCGGGTTTCTTTAGCTGCTGCGTTTATTCTCATTCCTCACACATGCCTTGAAGTGCATTGGACTCCAGGA GAGCCATTTGGGGTTTCTCTAGCTAAACAATAAATGTACCTGTCTCAGTCCGCTGGACTGAGTTGTTTTG AAGGTTCTCATGGTGCACAGCAGTGTGTATGTGGTGTACAACAGTGTGTATGCAGCCGTGCTTACAGCCT GTGGTTGCTACACGTCGTACCAGTCTTACCAGTGTTTGGAATGCTCAGACATAACCTCCTCTGTGAAGCT CAAGGTCTTAGGAGAATTTTGGATTTTGTGAAGAGATGGACAGGCTCATCAGAAATGTGGTTGTATAATG GTGAGCGCCACATGAGTGTAGAGGCACTATATGACGTAGTGTACTGAGCATGCAACGCTGCTGCCGTCCT TGTCTGTGGTTTCAGTTTGTAAAACTGCTAAGCCATTCTCATGCACATGGGTGAATGACATTTCCTAGGA ACGGTCTCTGACTCCCGGACAACTGCTCCTGTATCGGCTCTGGCTCCCCGGAACCATTAGAGACTAACTG TTGTTTCCACAAAGGAGGGCTGAGAGTGAACGTGATCATACATAGTTGTGAAATCGGTTTGATTGAGTGG GCTCTGAAAGGGGCGTTTAATGGTCTTGTTTCTTCATAACTCACAATCACTGGCTACCAAGATAACCCTG ATGTATTGATTCCATAAATGCATCACATTCAGTTTTACCATGTCTCCTTAGCAAACTTGTGTACTTATTT TCTGTTCAGATTAAAAAAAAAAAATGATAACCTAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:3154529 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3154529 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7133 same embryo
	EMAGE:7138 same embryo
	EMAGE:7136 same embryo
	EMAGE:7135 same embryo
	EMAGE:7134 same embryo
	EurExpress:euxassay_002679 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source