EMAGE mouse gene expression spatial database

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EMAGE:7275

Myo1c myosin IC ( MGI:106612)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_004336. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_004336_01	euxassay_004336_02	euxassay_004336_03	euxassay_004336_04

euxassay_004336_05	euxassay_004336_06	euxassay_004336_07	euxassay_004336_08	euxassay_004336_09

euxassay_004336_10	euxassay_004336_11	euxassay_004336_12	euxassay_004336_13	euxassay_004336_14

euxassay_004336_15	euxassay_004336_16	euxassay_004336_17	euxassay_004336_18	euxassay_004336_19

euxassay_004336_20	euxassay_004336_21	euxassay_004336_22	euxassay_004336_23	euxassay_004336_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7275_wholemount_strong.wlz

7275_wholemount_moderate.wlz

7275_wholemount_weak.wlz

7275_wholemount_possible.wlz

7275_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7275_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T5142
Entity Detected:	Myo1c, myosin IC ( MGI:106612)
Sequence:	sense strand is shown >T5142 CCACGCGTCCGCGGAGAGATCGTACCGGGGTTGCGGACTCCGGAGGTGGCCACGCCGTCCAGTCCAGCCC CCGCCCGATCACCCGAAGAACCAAGCCGGCCCTGGGCAGTGACGGGGTTCGAGTGACCATGGAGAGCGCC TTGACTGCCCGAGACCGGGTAGGGGTGCAGGACTTTGTCCTGCTGGAGAATTTCACCAGTGAGGCTGCCT TCATTGAGAACCTCCGGCGGCGGTTCCGGGAGAACCTCATTTATACCTACATCGGTCCTGTCCTAGTCTC TGTCAATCCCTACCGAGACCTACAGATCTACAGCCGGCAGCATATGGAACGCTACCGTGGTGTCAGTTTC TATGAAGTACCACCTCATTTGTTTGCAGTGGCTGACACTGTATACCGGGCACTTCGTACTGAGCGTCGGG ACCAGGCAGTGATGATTTCTGGAGAGAGTGGGGCAGGCAAGACAGAGGCCACCAAGAGACTGCTCCAGTT CTATGCAGAGACCTGCCCAGCCCCTGAACGGGGTGGCGCAGTGCGAGACCGCCTGTTGCAGAGCAACCCC GTGTTAGAGGCCTTTGGGAATGCCAAGACTCTCCGCAACGATAACTCCAGCCGGTTTGGAAAGTACATGG ATGTGCAGTTTGACTTCAAGGGTGCCCCCGTGGGAGGCCACATTCTCAGTTACCTCCTGGAAAAGTCCCG GGTGGTGCACCAAAATCACGGAGAGCGGAACTTCCACGTCTTTTACCAGCTACTGGAGGGGGGCGAGGAG GAGACTCTCCGTCGGCTGGGCTTGGAACGGAACCCCCAGAGCTACTTGTACCTGGTGAAGGGCCAGTGTG CCAAGGTCTCCTCCATCAACGACAAGAGTGACTGGAAGGTTATGAGGAAGGCGCTGTCCGTCATTGACTT CACTGAGGATGAAGTGGAGGACTTGCTCAGCATCGTGGCCAGCGTCCTACATCTGGGCAACATCCACTTT GCTGCTGACGAGGACAGCAATGCCCAGGTTACTACTGAGAACCAGCTCAAATATCTGACCAGGCTCCTTG GTGTGGAAGGTACAACACTTAGGGAAGCCCTGACCCACAGGAAGATCATCGCCAAGGGGGAAGAGCTCCT GAGCCCACTGAACCTTGAACAGGCGGCATATGCAAGGGATGCGCTTGCCAAGGCTGTGTACAGCCGGACA TTCACCTGGCTGGTCAGAAAGATCAATAGGTCACTGGCCTCTAAGGACGCTGAGAGCCCCAGCTGGCGAA GCACCACGGTTCTTGGGCTCCTGGACATTTACGGCTTTGAAGTGTTTCAGCATAACAGCTTCGAGCAGTT CTGCATCAACTACTGCAATGAGAAGCTGCAGCAGCTCTTCATCGAGCTGACTCTCAAGTCGGAGCAGGAG GAATACGAGGCTGAGGGCATCGCGTGGGAACCTGTCCAGTACTTCAACAACAAGATCATCTGTGACCTGG TAGAGGAGAAGTTCAAGGGCATCATCTCCATCTTGGATGAAGAGTGCCTGCGTCCTGGGGAGGCCACGGA CCTGACCTTTCTGGAGAAGTTGGAGGACACTGTCAAGCCCCACCCTCACTTCCTGACGCACAAGCTCGCT GACCAGAAGACCAGGAAATCTCTAGACCGAGGGGAGTTCCGCCTTCTGCATTATGCTGGAGAGGTGACCT ACAGTGTGACTGGGTTTCTGGATAAAAACAATGACCTCCTCTTCCGGAACCTGAAGGAGACCATGTGCAG CTCAATGAACCCCATCATGGCCCAGTGCTTTGACAAGAGTGAGCTCAGTGACAAGAAGCGGCCAGAGACG GTGGCCACCCAGTTCAAGATGAGCCTCCTGCAGCTCGTGGAGATCCTGAGGTCTAAGGAGCCTGCCTATA TCCGGTGCATCAAGCCAAACGACGCCAAGCAGCCGGGTCGCTTTGATGAGGTGCTCATCCGACATCAGGT GAAGTACCTGGGACTGATGGAGAATCTGCGCGTGCGCAGAGCTGGCTTTGCCTATCGTCGCAAATATGAG GCTTTCCTGCAGAGGTACAAGTCACTGTGCCCAGAGACATGGCCCATGTGGGCAGGACGGCCCCAGGATG GTGTGGCCGTGTTGGTCAGACACCTCGGCTACAAGCCAGAAGAGTACAAAATGGGCAGGACTAAGATCTT CATCCGATTTCCCAAGACCTTGTTTGCCACAGAGGACTCCCTGGAAGTCCGGCGGCAGAGTCTAGCCACC AAGATCCAGGCGGCCTGGAGGGGCTTTCATTGGCGACAGAAATTTCTCCGGGTGAAGCGATCAGCCATCT GTATCCAGTCATGGTGGCGTGGCACACTGGGCCGGAGGAAGGCAGCCAAGAGGAAGTGGGCAGCCCAGAC CATCCGTCGACTCATCCGTGGCTTCATTTTGCGCCATTCACCCCGGTGCCCTGAGAATGCCTTCTTCTTG GACCACGTGCGCGCCTCATTTTTGCTTAACCTGAGGCGGCAACTGCCCCGGAATGTTCTGGACACCTCCT GGCCCACACCCCCACCTGCCCTGAGAGAGGCCTCAGAACTGCTACGGGAACTGTGCATGAAGAACATGGT GTGGAAGTACTGCCGGAGCATCAGCCCTGAGTGGAAGCAGCAGCTGCAGCAAAAGGCGGTGGCTAGTGAA ATTTTCAAGGGCAAGAAGGACAACTACCCCCAGAGTGTCCCCAGACTCTTCATTAGCACACGGCTTGGCA CAGAGGAGATCAGCCCCAGAGTGCTTCAATCCTTGGGCTCTGAACCCATCCAGTATGCCGTGCCCGTGGT AAAATACGACCGTAAGGGTTACAAGCCTCGCCCCCGGCAGCTGCTGCTCACGCCCAGTGCTGTGGTCATT GTGGAGGATGCTAAAGTCAAGCAGAGAATTGATTATGCCAACCTAACCGGAATCTCTGTCAGTAGCCTGA GTGATAGCCTATTTGTGCTTCACGTGCAGCGTGAAGACAACAAGCAGAAGGGAGATGTGGTGCTGCAGAG TGATCATGTGATCGAGACACTAACCAAGACGGCCCTCAGTGCTGACCGCGTGAACAATATCAACATCAAC CAGGGCAGCATAACGTTTGCAGGGGGTCCAGGCAGGGACGGCATCATTGACTTCACATCGGGCTCAGAGC TTCTCATCACCAAGGCTAAGAATGGCCACCTGGCTGTGGTGGCCCCACGGCTGAATTCTCGGTGATGAAG GCTTCAGTGGACCCCTCCTGACTCCTGATGCTTCGCTTAGTCCCCTCCTCCCCTCCCAGTTACCAAAGAC TCAAGCTTCCAGACAGGGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTCGCCC CCTCTCGAGGTGATCAGGAGCCAGGGAGCTACCCCATGAGTGGGCCAGGCCGGGCCACAGCAATAGAAAA GCAGAGGCCTGAGCAGGCCAGGCCAGCCCTCTGCTGATGCCAAATATCTAAGAGAAGGGAATTTTAACTG AGGTTTTCTCTGAGATTTTTTGATGCTTTATAGGAAACTATTTTTTTAAGAAAGCCATTTTCCTACCCTA AACACACTGGATGTGTTTTTCCCTGCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGG GCTGGAAGGTCCTCTTCTCTGGCCAAGCCTCTCCTCATTCCCTGTCTGTCTGTCCATCCACCTGCACCTT TTGCAGCCCACTATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGA ATGTCCTTTTAGGGGCTGGGGTATAGCCCAGTGGTAGAACTGGTGCTAAGCATGTGTGAGACCCTGGGCT CAATCCCCAGCATTAAAAAATAAAAAATAGGTTTTTAATATTTTCACCCCAGTCTGAGGGCATCCCTAAA GTGGGGGAAAAGTCTTAAGAGTTTGGAAGTCTTCAGAGACAGTGTCTGGTCCAGGCTCCTGGAATCTACA GAGCTGGAGACAGAGGCACACAGAGGGAGGGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGT GAAGCCCGCCCTCAGCACATCTCACTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTC TCATGTATGCACCTGGCTCTCTGACCAGCAATCACCCTTGGGAGCTACCGGGTGGGAGGGACTCTTCTGC CTGGGTCTATGCCTTAGGATGACAACCTCCATACACATACATACTTTCGACCCAATTTAAGAATGGTAGG GTCTTTTATTGGCCTTGGGTGCCTCTGTGACCTGGGAGCCTAGGGACAGGGCTGGCCTTGGAGGAACTGC AGGGGCATCACCTCTTTCTGCTGCTTCTCTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTG CCCTCTGGGGCTCTCAGCCCACTGCTGACACTTCTGCAATCCAGAGAAACACTAAATAAAGCAATATGTA TTTGCCAACACAGTCTTCCTGTGAGTGTGGAAAAGGGGCCCTAGAAGGTAGACATTCTTAAGGGGCTTGG CACTACAGAAGAAAGGAGACAGACCTACTTAGGAGCAATAGAGAGAAACCAAGTTAGGTGTGGTATTGTG AGCCTTAGTGCTCAGGAAGCAGGGACAGGAGGATTGGATTTCTTAGTTCTAGGCCAGCCTGGTCTACAAA TCAAGTTCCAGGGCTATATAGACAGGCACGGGGCTTTGGATTTGGGCAAATAAATACCTGGTCTGGCAGC ACCGCTGGACTAAGGAGACCTAGCATGGGCAATATAAGCCCAGGGGCCTGTGCTGATGCAAGACTCAGGT GGGGAGGGTCAGCACTTCATAAGGAAGCTGGTGTTTGAGGTATCTCAGGGGCTTGCTTCCAGTTCTGGGG ATAAAGAATCCAGTCCAAAGTGGCTGGAGCGGTAAAGGCCACTTGTCAACAATGGCCATTTTATTGTCCT GGGGAGATCTACTTCTAGGTGATCAAAAGACATTGTTAGGAAAATGTCTTGGGGGCTAGAGAGATGGCTC AGTGGTTAAGAGAACTGACTGCTCTTCTGAAGGTCCTGAGTTCAATTCCCAGCAACTACACGGTGGCTCA CAACCATCTGTAATGGGGTCTGATGCCTTCTGTGTGTCTAAAGGGAGCAATGGTGATGTACTCATATGCA TAAAATAAATGAATAAATAAACAAATCTTAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:5344331 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5344331 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7280 same embryo
	EMAGE:7277 same embryo
	EMAGE:7276 same embryo
	EMAGE:7279 same embryo
	EMAGE:7278 same embryo
	EurExpress:euxassay_004336 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source