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EMAGE:7348

Tsn translin ( MGI:109263)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7348 EMAGE:7348 EMAGE:7348 EMAGE:7348 EMAGE:7348
"Pseudo-wholemount" of euxassay_004474. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004474_01 euxassay_004474_02 euxassay_004474_03 euxassay_004474_04
EMAGE:7348 EMAGE:7348 EMAGE:7348 EMAGE:7348 EMAGE:7348
euxassay_004474_05 euxassay_004474_06 euxassay_004474_07 euxassay_004474_08 euxassay_004474_09
EMAGE:7348 EMAGE:7348 EMAGE:7348 EMAGE:7348 EMAGE:7348
euxassay_004474_10 euxassay_004474_11 euxassay_004474_12 euxassay_004474_13 euxassay_004474_14
EMAGE:7348 EMAGE:7348 EMAGE:7348 EMAGE:7348 EMAGE:7348
euxassay_004474_15 euxassay_004474_16 euxassay_004474_17 euxassay_004474_18 euxassay_004474_19
EMAGE:7348 EMAGE:7348 EMAGE:7348 EMAGE:7348 EMAGE:7348
euxassay_004474_20 euxassay_004474_21 euxassay_004474_22 euxassay_004474_23 euxassay_004474_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7348Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7348_wholemount_strong.wlz
7348_wholemount_moderate.wlz
7348_wholemount_weak.wlz
7348_wholemount_possible.wlz
7348_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7348_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6449
Entity Detected:Tsn, translin ( MGI:109263)
Sequence:sense strand is shown

>T6449
CCCACGCGTCCGGCGACGGCGACGGGCGTTGCGAGCGAGTCCGCTACTTGTTTGTGGGTCGTACTTCTTC
GGCGGTGCTCCGGTGCTGACTGATTGTAGGGCAGCCAGCGCCATGTCTGTGAGCGAGATCTTCGTGGAGC
TGCAGGGCTTTTTGGCTGCCGAGCAGGACATCCGAGAGGAAATACGAAAAGTTGTACAGAGTTTAGAACA
AACTGCTCGAGAGATTTTGACCCTACTTCAAGGGGTCCACCAGGGTACTGGATTTCAGGACATTCCAAAG
AGGTGCTTGAAAGCGAGAGAACATTTCAGTACAGTAAAAACACATCTCACATCCCTGAAGACCAAGTTCC
CCGCTGAGCAGTATTACAGGTTTCATGAGCATTGGCGGTTCGTGCTTCAGCGCCTGGTCTTCCTGGCAGC
ATTTGTGGTATATTTGGAAACAGAGACCCTGGTGACCCGAGAGGCTGTTACAGAGATTCTTGGCATTGAA
CCAGATCGGGAAAAAGGGTTTCATCTGGATGTGGAAGATTATCTCTCAGGAGTTTTAATTCTTGCCAGTG
AACTGTCGAGGCTGTCTGTCAACAGTGTCACTGCTGGAGACTACTCTCGGCCCCTTCACATTTCTACTTT
CATCAATGAGCTGGATTCTGGTTTTCGTCTTCTCAATCTGAAAAATGACTCCCTGAGGAAGCGCTACGAC
GGCTTGAAGTACGATGTGAAGAAAGTAGAGGAGGTGGTCTATGACCTTTCCATCCGAGGCTTCAATAAGG
AGACAGCAGCGGCTTGTGGTGAAAAATAGGAGCTTTTCCCTGGGGCTGGCCTTGCTGGCGCTGCAGTTGC
CAGGGAGGGCTAGCTCAGTGCCTCTTCCTGTAGTTAGCACACCAGTTGCTAAACACTGCGCTTTATTTTC
GTAACCAGCTGTGTGCTGTGAGTGTCAGAATTGAAATACTTTTTGGATCTAAACAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3585366 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3585366 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7350 same embryo
 EMAGE:7352 same embryo
 EMAGE:7349 same embryo
 EMAGE:7347 same embryo
 EMAGE:7351 same embryo
 EurExpress:euxassay_004474 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS