EMAGE mouse gene expression spatial database

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EMAGE:7437

Coro1c coronin, actin binding protein 1C ( MGI:1345964)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


euxassay_004585_01	euxassay_004585_02	euxassay_004585_03	euxassay_004585_04	euxassay_004585_05

euxassay_004585_06	euxassay_004585_07	euxassay_004585_08	euxassay_004585_09	euxassay_004585_10

euxassay_004585_11	euxassay_004585_12	euxassay_004585_13	euxassay_004585_14	euxassay_004585_15

euxassay_004585_16	euxassay_004585_17	euxassay_004585_18	euxassay_004585_19	euxassay_004585_20

euxassay_004585_21	euxassay_004585_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7437_wholemount_strong.wlz

7437_wholemount_moderate.wlz

7437_wholemount_weak.wlz

7437_wholemount_possible.wlz

7437_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7437_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T7656
Entity Detected:	Coro1c, coronin, actin binding protein 1C ( MGI:1345964)
Sequence:	sense strand is shown >T7656 AAGAGGTAATCCGCGGCAGCGGTTGGAGGCTTCGCGGGGCTTTGCAGCAGGGACTTCGGCGGCGCCTCAG GCACCCGGGCTCTGACACGATGCGGCGAGTGGTGCGGCAGAGCAAGTTCCGCCACGTCTTTGGACAGGCG GTGAAGAATGACCAGTGCTATGACGACATCCGTGTCTCCCGAGTCACCTGGGACAGTTCCTTTTGTGCCG TCAACCCCAGATTCGTGGCCATCATCATAGAAGCGAGTGGGGGAGGGGCCTTCCTGGTGCTCCCTCTGCA CAAGACGGGACGAATTGACAAATCCTACCCTACAGCGTGTGGCCACACAGGACCAGTGCTGGACATAGAC TGGTGTCCACATAATGACCAGGTCATTGCCAGCGGCTCAGAGGACTGCACTGTTATGGTTTGGCAGATCC CGGAAAATGGACTCACCCTTTCCCTGACCGAGCCTGTGGTGATTCTAGAAGGGCACTCAAAAAGAGTTGG CATCGTGGCCTGGCACCCGACGGCCCGCAATGTGCTTCTCAGTGCAGGCTGTGATAATGCCATTATCATC TGGAACGTGGGGACAGGGGAAGCCCTCATCAACTTGGACGATATGCATTCAGACATGATTTACAATGTGA GCTGGAGCCGTAACGGTAGTCTCATCTGCACCGCATCCAAAGACAAGAAAGTGAGAGTCATTGACCCCAG GAAACAGGAGATTGTGGCGGAGAAGGAGAAAGCACACGAAGGAGCCAGGCCTATGCGTGCCATCTTCCTG GCGGACGGCAACGTCTTCACTACTGGCTTTAGCCGCATGAGCGAGCGGCAGTTGGCGCTCTGGAACCCAA AAAACATGCAGGAACCAATTGCTCTCCATGAAATGGACACTAGCAATGGGGTGCTGCTCCCCTTCTACGA TCCGGACACCAGCATCATCTACTTATGTGGGAAGGGTGACAGCAGTATCCGCTATTTTGAGATCACGGAT GAATCCCCATATGTCCACTACCTCAACACATTCAGCAGCAAGGAGCCTCAGCGAGGGATGGGCTACATGC CCAAGCGGGGCCTTGACGTCAACAAGTGTGAAATTGCCAGATTCTTCAAGCTTCATGAGAGAAAGTGCGA GCCCATTATCATGACGGTCCCCAGGAAGTCTGACCTCTTCCAAGACGACCTGTACCCTGACACGGCAGGG CCGGAAGCCGCCCTTGAGGCCGAGGAGTGGTTTGAGGGGAAGAACGCGGACCCCATCCTCATATCGTTGA AGCACGGGTACATTCCAGGCAAGAACAGGGACCTCAAGGTGGTCAAGAAGAACATCCTGGACAGCAAGCC GGCTGCAAACAAGAAGAGCGAGCTCAGCTGTGCCCCCAAGAAGCCCACAGACACGGCCAGTGTGCAAAAC GAAGCCAAGTTGGATGAGATTCTGAAAGAGATCAAATCCATAAAGGAAACAATCTGCAGTCAAGACGAGC GCATTTCCAAGTTGGAGCAGCAGCTGGCGAAGATGGCTGCCTGAGGCCCGCCCACCTCCACGGACGGTGG CTGCTCCTCCTCCGCGCACTCCCAGGGAGGGCAGAGAGGGAGACACTGCCATTTGGAGACATTCCATGTC AGATCTGTCAGCCAGCGATAGGCCACATTCCAGTAAGAACTCGGTTCCTCTCCCAAATTTCCGCAAACCT GGAAGCTGAGCTTTTCGTCAGGGAGCTTTGGTGTTCGGCAGGTCTGCTGACTTGCTGAGCTTTCCTACGT TTGAAATGCCAGATGTTCTGAATTTTAGAGACCAAGCCCCCCACTTGACCCAGCGTCCTCCTCACACACC TGATGACCGGGCCAGCGCCACCTCTGCTCTGTCTCTTCCTTTTTAATGTTGCCAAAACCGAAAGTAGCTT TTTTTTCTTTGTATTTTTCTACTTTGCAGTATTTGTGGGGTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT TCTTTCTTTCTTTCTTTCTTTCTTTCTTTTCTCTCCTCAATTTAAAAGGGACAGCACTGTGTATGTTTAT AAACTAAATGAAGATGAGATGATTATTTTGTATAAACACTCACGAGAACAATCAGTGCAGCCGCCTGCAC AGGGCTGGCTCACTCACAGCACAAACCTGGGCGTTAGTCTAACGACTGTGCAGAAGGAAGACTTGAGAAA TCACGTGGACCCACCACACACTGCCCCCATTCCATTGAGTCTTCGATCAAAAGTCCTGTCTCTCTCTCTC CTTGCTCTCTCTCTCCTAGAAGTTGGGTGGTTGCACAGAGGGAACTCGGTGATTATACTCTAACCCGAAC TAGCTCGCGTTTCTGCAGTTTTGTTCTCCACAGATGGTTGTGCCTGTCCCTTCCAGCAGTGTGGTTCCCT TCCGGGCAGTTTGGACAAGGGCACCCAAGGCGAGCGGATACCTGTGTGTTGACAGTCCTTGTCTACAGAG GCAGCTTGCCTGGCCCTTGGGTATAGTGTGGGGCTTGAACCCAGGCACTGTGTGCACAGCCTCTGCCCCA GGCCCTCTGTTTCCCTCGCTCCTGTCTTCCCTCCTTACTTTGCTGCCTCCTGTCTCAAGCGCCCAGCCAG CCCTCGAGGGCTCTTGAATGTTGCAGCGGAGGGAAAGGTCCAGAACAGAGTGGAAAGGGAAGTTCAGAGA TCGACCATAGCTGGCCACGCACAGGCCCTCTGCCCCACCACCCAGATCAGGCTGCTACTTGCCAGCACTG GACGTGCCCTGGGCATGCCTGCTCCAAGGGCAGCAGCTAGACCTTAGCCCTACTCTAACCTCACAGCCTC ATGGTGCGTGTCTATGGAAGCAGACGACCTGGGTAGTGTCAGATGGATCACAAAAGGCAAGCCTTGGCAA GTGTTGGTGCTGGTGTGGGCCCAGTGCTGGCTGCCAGCAAATGTACAGGTTATCAGGGCAGAGCATAGTA TGGCAGCAGCCGCTTAGAGTGTGTGGACTGACTGGGTAGTGTTGTAAGAAAAGGTTCTCTCAGCCACCGA GATGGGGGCCGCTGGCTCCGAAGCTTCGGGGCTCCTGAGTCTCTGTAGGTTTCTGTGTCTGTCTTGTGGT TTAATGTTGGATAAGGAGATGGAGAGACCATGGCTGGAATGACTCACACTGCATTGTCTGTACGTGTGCT ACGCTGAGGACTGTGTGAAGATTCACAAAGGTTCTGGGGTCCGTTGAATTAATTACGTAACAATTGTAGA GGCTGTTGATGAAGTCAGAGGGGCTGTGGTTGAGAGAGGCGGGAGTGACTGTAGTGTGTGCCCACCTGAC ACGCTGTGGTGGCCTCTGTTTCCCTGTGGCACCGGAGGAAGACAGTGAACTGCTCCTACACCCACTCTTA TAGAGTGGCCATAGTGTTCTGTCAAAACACTCGCTTCCGTTTTCAGAGATAAAAGGCATTGATTACAAAA AAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:30460345 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30460345 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7442 same embryo
	EMAGE:7440 same embryo
	EMAGE:7439 same embryo
	EMAGE:7438 same embryo
	EMAGE:7441 same embryo
	EurExpress:euxassay_004585 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source