EMAGE mouse gene expression spatial database

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EMAGE:7518

Traf1 TNF receptor-associated factor 1 ( MGI:101836)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_004632. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_004632_01	euxassay_004632_02	euxassay_004632_03	euxassay_004632_04

euxassay_004632_05	euxassay_004632_06	euxassay_004632_07	euxassay_004632_08	euxassay_004632_09

euxassay_004632_10	euxassay_004632_11	euxassay_004632_12	euxassay_004632_13	euxassay_004632_14

euxassay_004632_15	euxassay_004632_16	euxassay_004632_17	euxassay_004632_18	euxassay_004632_19

euxassay_004632_20	euxassay_004632_21

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7518_wholemount_strong.wlz

7518_wholemount_moderate.wlz

7518_wholemount_weak.wlz

7518_wholemount_possible.wlz

7518_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7518_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

mandible

moderate

single cell

moderate expression: see section 01 02 03 04 05 07 08 12 13 14 15 16 17 18 19 20

maxilla

moderate

single cell

moderate expression: see section 01 02 03 04 05 06 07 13 14 15 16 17 18 19

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T7680
Entity Detected:	Traf1, TNF receptor-associated factor 1 ( MGI:101836)
Sequence:	sense strand is shown >T7680 AAGAGGTAATCCCTTAACAGACCTTCCGGCCACCTGAAACCCCAAGATGGCCTCCAGCTCAGCCCCTGAT GAAAACGAGTTTCAATTTGGTTGCCCCCCTGCTCCCTGCCAGGACCCATCGGAGCCCAGAGTTCTCTGCT GCACAGCCTGTCTCTCTGAGAACCTGAGAGATGATGAGGATCGGATCTGTCCTAAATGCAGAGCAGACAA CCTCCATCCTGTGAGCCCAGGAAGCCCTCTGACTCAGGAGAAGGTTCACTCTGATGTAGCTGAGGCTGAA ATCATGTGCCCCTTTGCAGGTGTTGGCTGTTCCTTCAAGGGGAGCCCACAATCCATGCAGGAGCATGAGG CTACCTCCCAGTCCTCCCACCTGTACCTGCTGCTGGCGGTCTTAAAGGAGTGGAAATCCTCACCAGGCTC CAACCTAGGGTCTGCACCCATGGCACTGGAGCGGAACCTGTCAGAGCTGCAGCTTCAGGCAGCTGTGGAA GCGACAGGGGACCTGGAGGTAGACTGCTACCGGGCACCTTGCTGTGAGAGCCAGGAAGAACTGGCCCTGC AGCACTTGGTGAAGGAGAAGCTGCTGGCTCAGCTGGAGGAGAAGCTGCGTGTGTTTGCAAACATTGTTGC TGTCCTCAACAAGGAAGTGGAGGCTTCCCACCTGGCACTGGCCGCCTCCATCCACCAGAGCCAGTTGGAC CGAGAGTACATCCTGGGCTTGGAGCAGAGGGTGGTGGAATTACAGCAAACCCTGGCTCAAAAAGACCAGG TCCTGGGCAAGCTTGAGCACAGTCTGCGACTCATGGAGGAGGCATCCTTTGATGGTACTTTCCTGTGGAA GATCACCAATGTCACCAAGCGGTGCCACGAGTCAGTGTGTGGCCGGACTGTCAGCCTCTTCTCTCCAGCT TTCTACACTGCCAAGTATGGTTACAAGTTGTGCCTGCGCTTGTACCTGAACGGGGATGGCTCAGGCAAGA AGACCCACCTGTCCCTCTTCATCGTGATCATGAGAGGAGAATACGATGCTCTCCTGCCCTGGCCTTTCAG GAACAAGGTCACCTTTATGCTACTTGACCAGAACAACCGAGAGCATGCTATTGATGCCTTCCGGCCTGAC CTGAGCTCAGCCTCCTTCCAGCGGCCACAGAGTGAGACCAACGTGGCCAGCGGCTGCCCGCTCTTCTTCC CCCTCAGCCAGCTGCAGTCACCCAAGCACGCCTACGTCAAAGATGGCACAATGTTCCTCAAATGCATTGT GGACACTAGTGCTTAGGGATGGGGGGAGGGGGTGTCTCCTGACAGAACCAGCTTAGACTGGGGGACTTAG CTAGACAGCCAGACCCTGCCTGCCCTTGGAGCCCACAGCCCACGACAAGGAGGAGCCAAGGCTGGCATGA CTTCAGCGCCACAGCATGCTGGTTATGGCTGATGTGAGGCTGGAGAAACGTGTGCGTACAGAGACAGAGT GGAGGAGAAGACAGAAGTGCTCTTTTCACACAGACTACACGACACCAGGAGGCCAGCATGCCAGCAGCTT CTGAATGTTGAGACCAGCCTAGATCAGGATGAAAAGAGCCAGGCCTGAGGCTTGGACATTGAGCCAAGGC TATGGGGCCTAAGTGGAGGGGCACTCCTACCAGGACATTCTCTCGAGGTCAGGGCATAACTGGAAAAATG CCCCCATCTCTCTGTTCAGACTCAAAACTAGAACCACAGGGCAGAAGGGTCAGACATTAATGTGAATTTA ACCTGCCCTGGACTGAGTTCCTATGTTAACAGACACGCAAACAGGTAAACCCAGAAACTGCCCTGGGAAA TGCTTAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:30748947 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30748947 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7521 same embryo
	EMAGE:7517 same embryo
	EMAGE:7519 same embryo
	EMAGE:7522 same embryo
	EMAGE:7520 same embryo
	EurExpress:euxassay_004632 same experiment
	MGI:4828886 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source