EMAGE mouse gene expression spatial database

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EMAGE:7630

Numbl numb-like ( MGI:894702)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_004724. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_004724_01	euxassay_004724_02	euxassay_004724_03	euxassay_004724_04

euxassay_004724_05	euxassay_004724_06	euxassay_004724_07	euxassay_004724_08	euxassay_004724_09

euxassay_004724_10	euxassay_004724_11	euxassay_004724_12	euxassay_004724_13	euxassay_004724_14

euxassay_004724_15	euxassay_004724_16	euxassay_004724_17	euxassay_004724_18	euxassay_004724_19

euxassay_004724_20	euxassay_004724_21	euxassay_004724_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7630_wholemount_strong.wlz

7630_wholemount_moderate.wlz

7630_wholemount_weak.wlz

7630_wholemount_possible.wlz

7630_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7630_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T8711
Entity Detected:	Numbl, numb-like ( MGI:894702)
Sequence:	sense strand is shown >T8711 GGGGCGCCCGGGCCCTGGATGTCCCGCAGCGCGGCGGCCAGCGGCGGACCCAGGAGACCTGATCAGCATT TGTCCCCAGCCCCCTGTGGGGCCTCGGGGCCCCCTGAAACCTTCAGGACGGAGTCAGACGGGGCAGGCAC CATGAACAAGTTACGGCAGAGTCTGCGGCGGAGGAAGCCAGCCTATGTGCCTGAGGCATCACGCCCACAC CAGTGGCAGGCAGATGAGGATGCGGTGCGCAAAGGCACCTGCAGCTTCCCTGTTAGGTACCTGGGCCACG TGGAAGTGGAGGAGTCCCGGGGAATGCACGTTTGTGAAGATGCTGTGAAGAAGCTGAAGGCGATGGGCCG GAAGTCCGTGAAGTCTGTCCTGTGGGTGTCAGCTGATGGGCTCCGAGTGGTGGATGACAAGACCAAGGAC CTGCTGGTAGACCAGACCATTGAGAAGGTCTCCTTCTGTGCTCCTGATCGCAACCTGGACAAGGCTTTCT CCTACATATGCCGCGACGGCACCACACGCCGCTGGATCTGCCACTGCTTCCTGGCCCTCAAGGACTCTGG TGAGAGGCTGAGCCATGCTGTGGGCTGCGCGTTCGCCGCCTGCCTGGAGAGGAAGCAGCGACGGGAGAAG GAATGCGGAGTCACCGCCGCCTTCGACGCCAGTCGCACCAGCTTTGCCCGTGAGGGCTCCTTCCGCCTGT CGGGGGGCGGGCGGCCTGCGGAGCGCGAGGCAGGGGACAAGAAGAAAGCCGAAGCAGCAGCTGCTCCTGC TGTGGCTCCTGGACCTGCCCAGCCTGGGCACGTTTCTCCGACACCAGCCACCACATCCCCTGGAGAGAAG GGAGAGGCGGGCACCCCAGTGGCTGCAGGCACCACTGCTGCTGCCATTCCCCGGCGCCACGCACCTCTGG AGCAGCTGGTTCGCCAGGGCTCCTTTCGTGGGTTCCCTGCCCTCAGTCAGAAGAACTCACCTTTCAAACG TCAGCTGAGCCTACGGTTGAATGAGCTGCCATCAACACTGCAGCGCCGCACGGACTTCCAGGTGAAGGGC ACAGTGCCTGAGATGGAGCCTCCTGGTACCGGGGACAGCGATGGCATCAATGCTCTGTGCACACAGATCA GCTCGTCTTTCGCCAGCGCTGGGGCCCCAGCGTCAGGGCCACCACCTGCCACAACAGGGACTTCTGCCTG GGGTGAGCCCTCCGTACCCGCTGCAGCTGCCTTCCAGCCTGGGCACAAGCGGACACCCTCTGAGGCTGAG CGATGGTTGGAGGAAGTGTCCCAGGTGGCTAAGGCCCAGCAGCAACAGCAACAGCAGCAGCAGCAACAAC AGCAGCAGCAAGCCACCTCCGTGCCACCAATGCCCACCATGGCCCCCACCCTTCAACCCTTTTCTGCCCC AGTGGGGCCCTTTGACACTGCAGCTGCCCAAGTGGCTGTTTTCCTGCCGCCCACACATATGCAGCCTCCG TTTGTGCCCGCCTACCCAGGTCTGGGTTATCCACCAATGCCCCGGGTGCCTGTGGTGGGCATCACACCTT CACAGATGGTAGCCAACGCCTTCTGCTCAGCTGCCCAGCTCCAGCCCCAACCTGCCACACTGCTTGGAAA AGCTGGGGCCTTCCCCCCACCTGCTGCACCCAGTGCCCCTGGGGGCCAGGCCCGTCCGCGCCCCAATGGG GCTCCCTGGCCCCCAGAGCCAGCGCCTGCCCCTGCCCCTGAGTTGGACCCCTTCGAGGCCCAGTGGGCGG CACTAGAAGGCAAACCCGCTGTGGAGAAACCCTCCAACCCCTTCTCTGGTGACTTGCAGAAGACCTTCGA GATTGAACTGTAGCCCAAATTGCCCTGCTCCCGCTCCATCAGCCCCAGGTGTACCGCGCTCAGGAGGGGA GGCCCAGCCTCTATCCTAGTGTTGCTCCCTGAGCTGCGCCCCTCAATGCTCCCTCTAAGCCCTTCTCTCC ACCACCCCTCACAAACCACTACAGAACCAATATTGTGATGCCTAGGTTTTGCCAAGATGGAATTCAGGGA TGGACCCAGCCTGGCTAAGGGAACCATTTCACTGCCGGACTTAGGCTGGTGATGCCCCTTCCCCAGCCCC AGTCATGGAATGCCCTCTGTTCAAGCTACTTTCCCTAGTTTCTGTTGTGCCCTTCCACCTTCCAGTGTTG GGCAGGGTGGAGGAGGGAGGCCCACTTAAGCCTGGTCCGTCCTCTCCTTGTCCCATACACACAGCACAAG CTAAGGGCTTCCTCTCTGCCCACGCTGTGTTCACTGCCAATGCTGTGCTTGCCCTGGCCCCCTCCCCGAT TCGATTCGGGGCGTGTCTTCCGGAGGGCCAAGGTCTCACGGGGTGGGGCCCGACTGGGGGCCCAGGAGAG GGGCGGTGGGAGGGATGAAGACTCTGTTACCTCATGTCGGTGCCCGCTGGGGAGGGGTCCCAGGAGAAGA AGAAGGGGGTGCCTGGCGGGTACTTTTCTATCTTTTATTTCCAGATTTTTTTTGTATCTAAACTTGCAGA TTTGTATTATACAAGGACAGCCAATAAAGGAAGAATATAATGGTGAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6403012 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6403012 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7625 same embryo
	EMAGE:7629 same embryo
	EMAGE:7627 same embryo
	EMAGE:7626 same embryo
	EMAGE:7628 same embryo
	EurExpress:euxassay_004724 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source