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EMAGE:8202

Srm spermidine synthase ( MGI:102690)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:8202 EMAGE:8202 EMAGE:8202 EMAGE:8202 EMAGE:8202
"Pseudo-wholemount" of euxassay_007447. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_007447_01 euxassay_007447_02 euxassay_007447_03 euxassay_007447_04
EMAGE:8202 EMAGE:8202 EMAGE:8202 EMAGE:8202 EMAGE:8202
euxassay_007447_05 euxassay_007447_06 euxassay_007447_07 euxassay_007447_08 euxassay_007447_09
EMAGE:8202 EMAGE:8202 EMAGE:8202 EMAGE:8202 EMAGE:8202
euxassay_007447_10 euxassay_007447_11 euxassay_007447_12 euxassay_007447_13 euxassay_007447_14
EMAGE:8202 EMAGE:8202 EMAGE:8202 EMAGE:8202 EMAGE:8202
euxassay_007447_15 euxassay_007447_16 euxassay_007447_17 euxassay_007447_18 euxassay_007447_19
EMAGE:8202 EMAGE:8202
euxassay_007447_20 euxassay_007447_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:8202Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
8202_wholemount_strong.wlz
8202_wholemount_moderate.wlz
8202_wholemount_weak.wlz
8202_wholemount_possible.wlz
8202_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:8202_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6882
Entity Detected:Srm, spermidine synthase ( MGI:102690)
Sequence:sense strand is shown

>T6882
CGGACGCGTGGGCGCGGGCAGCGGGCAGAGCTGGTCACGTTGTGCTGGGGGGGGTCCGCGCGCCCTGCAG
TCCCGAACCCGCTACGCGCTCCGTCGGCCCGCCCGCCCGCCATGGAGCCTGGCCCCGACGGCCCAGCCGC
GCCCGGCCCCGCCGCCATCCGTGAGGGCTGGTTCCGAGAGACCTGCAGCCTGTGGCCCGGCCAGGCCCTG
TCGCTGCAAGTGGAGCAGCTGCTTCACCACCGGCGATCGCGGTACCAAGACATCCTCGTCTTCCGCAGTA
AAACCTACGGCAACGTGCTGGTTCTGGATGGCGTCATCCAGTGTACTGAGAGGGATGAGTTCTCCTACCA
GGAGATGATCGCCAACCTGCCGCTCTGCAGCCACCCCAACCCGCGGAAGGTGCTGATCATCGGGGGTGGA
GATGGGGGCGTCCTACGGGAAGTGGTGAAGCACCCCTCTGTGGAGTCGGTGGTCCAGTGCGAGATTGATG
AGGATGTCATTGAAGTCTCTAAGAAGTTCCTGCCTGGCATGGCCGTTGGCTTCTCCAGCTCAAAGCTGAC
TCTCCACGTGGGCGATGGCTTTGAGTTCATGAAACAGAACCAAGATGCCTTTGACGTCATCATCACCGAC
TCCTCAGACCCCATGGGCCCTGCTGAGAGCCTCTTCAAGGAGTCCTATTACCAGCTCATGAAGACAGCAC
TCAAAGAAGATGGCATCCTGTGCTGCCAGGGTGAGTGCCAGTGGCTGCACCTGGACCTCATCAAGGAGAT
GAGGCACTTCTGCAAATCTCTCTTCCCCGTGGTGGACTACGCCTACTGTAGCATTCCTACCTATCCCAGC
GGCCAGATCGGCTTCATGCTGTGTAGCAAAAACCCGAGCACCAACTTCCGGGAGCCAGTGCAGCAGTTGA
CACAGGCCCAGGTGGAGCAGATGCAGCTGAAATACTATAACTCGGACATGCACCGTGCCGCCTTCGTACT
GCCCGAGTTCACCCGGAAGGCCCTCAATGACATAAGCTGAATCCAGGTGCCACTGTGACACCACCCGAGA
CCTCAATCGGATTGGACCAAGGATCTTCCAAGTTGTCTGGGGACCACCAGTCCTGGACCAGACTCCCAGA
TGACTCTTGCCCACCAACCAAGTGTTACAGGCCCCACGATGCTGCCTGGCCTGGCCTGGCCTGGCCTGCC
CTGCTGGGTGGACTCAGTCTCTGTCTGTCTATCTCTGTGGCGTTCAGCCCCACGCCTATACCAGCTCTGT
ACAGCACCGCCTATGCCCTGTGACCCAACAAAATACATGTGTATTTATAACAAGCTCAGTCATGACCTCT
GAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3966710 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3966710 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:8203 same embryo
 EMAGE:8201 same embryo
 EMAGE:8199 same embryo
 EMAGE:8200 same embryo
 EurExpress:euxassay_007447 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS