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EMAGE:10252

Atp13a1 ATPase type 13A1 ( MGI:2180801)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:10252 EMAGE:10252 EMAGE:10252 EMAGE:10252 EMAGE:10252
"Pseudo-wholemount" of euxassay_018897. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018897_01 euxassay_018897_02 euxassay_018897_03 euxassay_018897_04
EMAGE:10252 EMAGE:10252 EMAGE:10252 EMAGE:10252 EMAGE:10252
euxassay_018897_05 euxassay_018897_06 euxassay_018897_07 euxassay_018897_08 euxassay_018897_09
EMAGE:10252 EMAGE:10252 EMAGE:10252 EMAGE:10252 EMAGE:10252
euxassay_018897_10 euxassay_018897_11 euxassay_018897_12 euxassay_018897_13 euxassay_018897_14
EMAGE:10252 EMAGE:10252 EMAGE:10252 EMAGE:10252 EMAGE:10252
euxassay_018897_15 euxassay_018897_16 euxassay_018897_17 euxassay_018897_18 euxassay_018897_19
EMAGE:10252 EMAGE:10252 EMAGE:10252 EMAGE:10252
euxassay_018897_20 euxassay_018897_21 euxassay_018897_22 euxassay_018897_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:10252Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
10252_wholemount_strong.wlz
10252_wholemount_moderate.wlz
10252_wholemount_weak.wlz
10252_wholemount_possible.wlz
10252_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:10252_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50135
Entity Detected:Atp13a1, ATPase type 13A1 ( MGI:2180801)
Sequence:sense strand is shown

>T50135
ACTGCGCGCTCACCTGCACCCCGGAGTATGATCCCAACAAAGTAACCTTTGTGAAGGTGGTGCCAACCCC
CAACAATGGCTCCACTGAGCTTGTGGCCCTGCACCGTGACAAGGGTGAAGATGGGCTGGAGGTGCTGTCA
TTTGAATTCCAGAAGATCAAATATTCCTATGATGCCCTGGAGAAAAAGCAGTTCCTTTCGGTGGCCTTCC
CAGTGGGGAATGCCTTCTCTTACTATCAAAGCAACAGAGGCTTCCAGGAAGACTCAGAGATCCGAGCTGC
AGAGAAGAAGTTTGGAAGCAACAAGGCTGAGATGGTAGTGCCCGACTTCTCTGAGCTTTTCAAGGAGAGA
GCCACAGCCCCTTTCTTCGTGTTTCAGGTATTCTGCGTTGGGCTCTGGTGCCTGGACGAGTATTGGTACT
ACAGTGTCTTCACTCTGTCCATGCTGGTGGCTTTCGAAGCTTCCCTAGTGCAGCAGCAGATGAGGAACAT
GTCAGAGATCCGAAAGATGGGCAACAAGCCCCATATGATACAGGTCTACCGCAGCCGAAAGTGGAGGCCT
GTCGCCAGTGATGACATTGTTCCTGGGGACATCGTGTCTATCGGCCGCTCGCCCCAGGAGAACTTGGTGC
CCTGTGATGTACTGCTGCTACGGGGCCGCTGCATTGTAGACGAGGCCATGCTCACTGGGGAATCTGTGCC
ACAAATGAAGGAGCCCATTGAAGACCTGAGCCCAGACCGTGTCCTAGACCTGCAGGCCGATGCTCGGCTG
CATGTCATCTTTGGGGGCACCAAGGTGGTACAGCACATTCCCCCGCAGAAGGCCACCTCGGGCCTGAAGC
CGGTCGACAATGGATGTGTGGCCTTTGTCCTGAGAACTGGGTTCAACACATCCCAGGGCAGACTACTGCG
TACAATTCTCTTTGGGGTAAAGAGGGTCACTGCA
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:ACTGCGCGCTCACCTGCACC; Reverse Primer - name:unspecified, sequence:TGCAGTGACCCTCTTTACCC. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:10248 same embryo
 EMAGE:10251 same embryo
 EMAGE:10247 same embryo
 EMAGE:10250 same embryo
 EMAGE:10249 same embryo
 EurExpress:euxassay_018897 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS