EMAGE mouse gene expression spatial database

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EMAGE:10280

Lrrc42 leucine rich repeat containing 42 ( MGI:1925059)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_000277. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_000277_01	euxassay_000277_02	euxassay_000277_03	euxassay_000277_04

euxassay_000277_05	euxassay_000277_06	euxassay_000277_07	euxassay_000277_08	euxassay_000277_09

euxassay_000277_10	euxassay_000277_11	euxassay_000277_12	euxassay_000277_13	euxassay_000277_14

euxassay_000277_15	euxassay_000277_16	euxassay_000277_17	euxassay_000277_18	euxassay_000277_19

euxassay_000277_20	euxassay_000277_21	euxassay_000277_22	euxassay_000277_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10280_wholemount_strong.wlz

10280_wholemount_moderate.wlz

10280_wholemount_weak.wlz

10280_wholemount_possible.wlz

10280_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10280_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

ventral grey horn

moderate

regional

moderate expression: see section 13 14 15 17

meckel's cartilage

moderate

regional

moderate expression: see section 03 04 05 07 08 17 18 21 22

lower jaw molar

moderate

regional

moderate expression: see section 07 08 17 18 19

upper jaw molar

moderate

regional

moderate expression: see section 06 07 08 17 18 19

cranium

moderate

regional

moderate expression: see section 01 02 03 04 05 06 07 18 19 20 21 22 23

tail dorsal root ganglion

moderate

regional

moderate expression: see section 11 12 13 17 18 19

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T3625
Entity Detected:	Lrrc42, leucine rich repeat containing 42 ( MGI:1925059)
Sequence:	sense strand is shown >T3625 TGGCCTCGAGCCAGATTCGGCAAGAGGCGCTCGCTGCCCCGGGCAGGGGCACAGTTGCAACCAAGGCAAT GGCTTACTACCTCAACTCAGAAGCCCACCTGGATCCAGGGCCCATCTATGTTCGAGAAAATGGGCAGCTA CACATGGTCAACCTGGCTCTGGATGGTGTTAAAAACAGCCTGCAGAAGCCACGACCATTCAGACTCTTTC CCAAAGGCTTTTCCGTGGAGCTGTGCATGAACAGGGAAGACGACACTGCACAGAAAGAGAAGACCGATCA CTTTATCTTCACGTACACCCGAGAGGGGAATCTGCGATACTCTGCTAAGTCCCTCTTCAGTCTGGTGCTG GGCTTCATCTCCGACAATGTTGATCACATTGATTCCCTCATCGGCTTTCCTGAGCAGATCGCTGAGAAGC TGTTCTCTGCTGCTGAAGCCAGACAGAAATTCACAGAGCCAGGGGCAGGGCTCAGGGCGTTACAGAAGTT CACTGAGGCCTACGGGAGTCTGGTGCTGTGCTCGCTGTGCTTGCGAAACAGGTATTTGGTGGTTGCAGAA AAGCTTGAAGAG
Notes:	The probe template was PCR amplified from IMAGE:3167988 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:3167988 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10279 same embryo
	EMAGE:10278 same embryo
	EMAGE:10281 same embryo
	EMAGE:10277 same embryo
	EMAGE:10276 same embryo
	EurExpress:euxassay_000277 same experiment
	MGI:4825994 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source