EMAGE mouse gene expression spatial database

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EMAGE:10730

Ate1 arginyltransferase 1 ( MGI:1333870)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_002987. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_002987_01	euxassay_002987_02	euxassay_002987_03	euxassay_002987_04

euxassay_002987_05	euxassay_002987_06	euxassay_002987_07	euxassay_002987_08	euxassay_002987_09

euxassay_002987_10	euxassay_002987_11	euxassay_002987_12	euxassay_002987_13	euxassay_002987_14

euxassay_002987_15	euxassay_002987_16	euxassay_002987_17	euxassay_002987_18	euxassay_002987_19

euxassay_002987_20	euxassay_002987_21	euxassay_002987_22	euxassay_002987_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10730_wholemount_strong.wlz

10730_wholemount_moderate.wlz

10730_wholemount_weak.wlz

10730_wholemount_possible.wlz

10730_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10730_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

facial vii ganglion

moderate

regional

moderate expression: see section 04 05 06 21 22

glossopharyngeal ix ganglion

moderate

regional

moderate expression: see section 07 08 19 20

trigeminal v ganglion

moderate

regional

moderate expression: see section 03 04 05 06 07 08 09 18 19 20 21 22 23

vagus x ganglion

moderate

regional

moderate expression: see section 09 18

vestibulocochlear viii ganglion

moderate

regional

moderate expression: see section 07 08 09 18 19 20

dorsal root ganglion

moderate

regional

moderate expression: see section 08 09 10 11 12 16 17 18 19

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T4242
Entity Detected:	Ate1, arginyltransferase 1 ( MGI:1333870)
Sequence:	sense strand is shown >T4242 GTGGGGTGGTGGAGGCGAAGGCGGCGGTAGCGGCGGCTGCGTAGGACTGGGTGGCGCAGCGGCGGCGGGG TCGCGGACATGGCTTCTTGGAGCGCGCCTTCACCTAGCCTTGTAGAGTATTTTGAGGGCCAGACCTCCTT CCAGTGTGGCTACTGCAAGAACAAGTTGGGCAGTCGCTCCTATGGCATGTGGGCACATTCCATGACAGTG CAGGATTATCAGGATCTTATAGACCGAGGATGGAGAAGAAGTGGGAAATATGTGTACAAACCTGTCATGG ATCAAACATGCTGTCCTCAGTATACAATAAGGTGTCATCCTTTACAGTTTCAGCCATCAAAATCTCACAA GAAAGTTTTGAAAAAAATGCTGAAATTTCTGGCTAAAGGAGAGATCTCGAAAGGCAATTGTGAGGATGAG CCCATGGATTCTACAGTGGAGGATGCTGTTGACGGTGACTTTGCATTAATTAACAAGCTGGATATAAAGT GTGATCTCAAAACACTCAGTGACCTCAAAGGAAGCATAGAGAGTGAAGAGAAGGAGAAAGAAAAGAGTAT AAAGAAAGAAGGGTCTAAAGAATTCATTCATCCACAATCTATAGAGGAGAAGTTGGGCTCTGGTGAACCA TCACATCCAATCAAAGTTCATATTGGTCCTAAGCCAGGCAAAGGGGCTGACTTGAGTAAGCCTCCATGTC GGAAAGCAAGGGAAATGAGGAAAGAAAGGCAAAGATTAAAACGGATGCAGCAGGCCTCAGCTGCAGCCTC GGAGGCTCAAGGTCAGCCAGTCTGTTTGTTACCAAAGGCTAAATCCAACCAGCCCAAGTCACTGGAAGAT TTGATTTTTCAATCTTTACCAGAAAATGCATCGCACAAGTTAGAGGTGAGGGTGGTAAGATCTTCTCCAC CAAGTCCTCAGTTCAGAGCCACATTTCAGGAGTCTTACCAGGTCTATAAACGCTACCAGATGGTTGTTCA CAAGGACCCGCCTGATAAGCCAACCGTGAGCCAGTTTACAAGATTCCTTTGCAGCTCACCATTGGAGGCA GAGCACCCTGCTGATGGACCAGAATGTGGTTATGGCTCCTTTCACCAGCAGTACTGGCTCGATGGGAAGA TCATTGCTGTGGGGGTGTTAGACATTCTCCCGTACTGTGTGTCTTCTGTGTATCTCTACTACGATCCTGA TTATTCATTTCTGTCTTTGGGTGTCTATTCAGCATTAAGAGAAATTGCTTTTACTAGACAACTGCATGAG AAAACATCGCAACTCAGCTATTATTATATGGGTTTCTACATTCATTCCTGTCCCAAGATGAGATACAAGG GTCAATATAGACCTTCTGATTTGCTGTGTCCTGAGACGTATGTCTGGGTGCCCATTGAGCAGTGCCTGCC TTCTCTGGACAACTCCAAGTACTGCCGTTTCAACCAGGACCCCGAAGCAGAGGATGAAGGACGCAGTAAG GAACTTGACCGACTAAGGGTGTTTCACAGACGATCTGCCATGCCTTACGGTGTTTATAAGAATCACCAAG AAGACCCAAGTGAGGAGGCTGGTGTGCTGGAGTATGCAAACCTCGTAGGACAGAAGTGCTCGGAGAGGAT GCTGCTGTTCAGACACTGAAGGCCTGCACCTCAGCCCAGCGCCAGCCTGGCATCTCTTGCCACAGTCCCA CCTGCTTCTCGGCTCCTGCAGCCATTCACCAAGTACATTCGTAGAGCTTTTTAAAAATATTTTGTGGAAT TGTATTTATGAGAATCTTGTGGTTAATATAAAGATTTTAAAATATTCTATGACCTAGCCCTTTAATTGGG ACTTGTCCTTTGCAGCTTGCTTCTGGAGCAAGGTGTGCTTCATGTCTCCAGTGAATATTTAGGGAAGGAA AATGAAGAAGTCAATATAAGTCATTTTGTCACAGTTACTGTTCTGTGCTGGAGAAATTCTGACACAGAGA CTGTTCTTTTAGACCAATGGTTCTTAACCTGTGGGCTCACCACACTCACAGGCCGAATGTTAGATAGCCT GTGTGAGATCAACTCATAATAACTCATAATCGTAGCAAAATTACAGTTATGAAGTAGCAACAAAATAATT TTATGGTTTGGGGTGGGATCACCACAACGTGAGGAAATGTATTAAAGGATGGCAGTATTAGGAAGGTAGA GAAAGAACCACTGGCTAAGACCCATGCAAGACATTAGCTTATGCTGGGAAATTCAGATGGGCTTAAAGGT GAAGAGCACATTCCATCCCAGGAAATGTGCCTTTCCCACAAACCAGAACCCTGTTACTCTGCTTGATAGT AAACCTGCCAGTGTTGTAGTGTATAATAGACAACAGGAACTGTAAACATTGCAAACATCAGGTGTTCACT TTGGGTGTCTGTCCAGGACTGTCCTGCCTATGTCTGTTGTCTTGGCATAATTGTTTTCCTTGTCACTAGT GTTCCCTTGTGCCCCAGAGTTATCTCTGTTTGGATGATAAAATATGCAGTGATCTTAGTGGTGTTTGTTC TATTTCTACAAATATAAGAAACAACTTTCTAAAGAAACGTCGTAACTCCTGCTTGATCTGAGGCTTATCC AAAGAAAATAGCTTCCTACTTTCCATTCTCTGGAACTCAGACGCTTTTTTGTGGTTAGTGATAGAAGTGA TTATTATCTAGTCCCGTAGCTATGCACAGCCGTAGTGGAGTTGGTGGGGCCTCTAGCCTCTGCATTCCTC TTCTAGTTGTGGGTCAGAGAGTAGGCGCTGCCATGGTACTTCAGAATGGAGACCAGCCATTCACTTTCAT TCTTGTGCTGTTGGGCCTTCTGCTTGTTCACCAAATGCCTGCTGTCAAGGAGGCAGGCAGCCAGCTACTT CGTGAGGCACATCAGACCTGGTGAGGAGAGGCTTCCCTCAGGTGCTCGGGAAGCTGGATGCACAGGTTAG CCCTTTGTTTGAACTTGTTCTCAGCTAGCCCCTTCTAGAAGTGCTTCCAAGCCTGGCCTTGGAGCTGCTG AGAGCACCTATCCCACAGTGAGGGTAGGGTTGTTACTTTATTTCTTTTCATAAAAATCACTCCAATGGGA AGCACCTGGAACGCTAAGAAATTAAAAGTCGTTTGAAATCCTCCCAGGCATAGAGAAAGGAGCATTATGG AAACCCACAAATCTCTTGTCCACCCCAAATAAAACTGTGCATTCCTTGCTATGTAGTTGCCCTCGGTGAA TGTGTGTGAGATTGAAGATTGCAGAAGATGTGATAGGTAATCTCAGTATTCTTCAGTAGGATGGGATCAC ATATATGACCTTGGCATTGGGCAGCCAGGCATATCCTGGTAGGTGGTATAGCCATGCTACCAGAGGGGTT TGTTTTTGGGAGGGGGCGGGGGGTCAGCCCAACATCTTACCCTAGCTCTGAGTTTCTCCTGCAGAGAATA GAGGAAAATGGCTCACTGTCCCTGTTTCTAGACTGATGCGCCTAACCTAGGGTGGCCCTACTGAGGCTTC AGAGCGTCTTGGGCATGAAAACTCTCTCTTCAGCTCAGTTGCTTTGTATTCATTCTTTCCTCCCTCCTCC CTCTATCCTCTCCTCAATACAGTTTTTTTCGACTAGTATGAAACCTTAGGGTTCTAGATGTTGTCGAAGA TGTGTCCTTGGGTGGGACTGAGGAGATAGCCCAGTTAGTACAGTGCCTGAGTTCAGTTCTCTAGAGCCCA TGTAAAATGTTGGGTCTGGTAGTGTGTGTTTGAAATGCAGGCACTGGGGATTCAGTAGAGGAGTACCTCT TGGGCCCACTGGCCACTGGCCTAGCCACTGGGCATCGAGCCACTGAGAGACCCTGTCTAAATGGAGTTGG ACAGCATTTATGAGAACATTAGGGGCTTGCTAATATTTTGAGCTCTTGAGTGAGTGTCCATCACAGCTCG GTTAGGACAGTCAAGAAAGTATCCCAACTTGGCATTTTTGTAAAGTCTCGCTGAGGCGGCTGATTCTGTC AGTGATTTTCATGTAAATAAAGATGCGTGCAAGCCTTTCAGGGACAGTGTCTGACTTCTCCAGGTAGGAA GGTCTGTGTGTTCCATCTCCTTCTTAGTGTCCCCTTCTGAGTTCAGGTAGAGTCACACCTTCCTCCATGC CTACAGCGTAGGGCTCATTTTGATTCTCAGTGTACCATCTTTATTTAAATTATTTTCAGTTCTCTGAGAC TTTTGTTACTTTTATTACAGGTAATCTGAGCACTTTTATATTCTAAGATAGAAACTATATTATCAGATGA ATATAGTCACTCAATTAAAATTATTTAGATAAAATTATTGTTTATGTTTTCTTTCAAGCAATCTATCCTA TTTTTATCCATTTGCAAATGCCAGTTTTGTGTGGTTTCTTAGCATATCAAAATTATTATGTAGAAGAATG TTTCTAGCTTTCTGAACAGCAAATAGTTTGGTGTGTAAATATTGTATTATTTCAGTGTGAATAAAGGTGA GAGAGAATATGAACATTTAACCAAAGTGATTCTACTGTGGCTGACTTAAAAGAACGGAAGGAAGTGAGTG GGGATTTGACACGTTTGAATTACGAGTTATTCAGTGTGCGTTCCTCTCCTACGGGAACCACTGGCCAGAA GGCAAAGTAAGTCTGACTGCATTGGAGATTTTCGTTCTTGTAAAAAAGCCCAAAATAAAAATACTAACAA TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:4503326 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4503326 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10732 same embryo
	EMAGE:10731 same embryo
	EMAGE:10729 same embryo
	EMAGE:10728 same embryo
	EurExpress:euxassay_002987 same experiment
	MGI:4823289 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source