Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:10816

2700062C07Rik RIKEN cDNA 2700062C07 gene ( MGI:1915296)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:10816 EMAGE:10816 EMAGE:10816 EMAGE:10816 EMAGE:10816
"Pseudo-wholemount" of euxassay_003039. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_003039_01 euxassay_003039_02 euxassay_003039_03 euxassay_003039_04
EMAGE:10816 EMAGE:10816 EMAGE:10816 EMAGE:10816 EMAGE:10816
euxassay_003039_05 euxassay_003039_06 euxassay_003039_07 euxassay_003039_08 euxassay_003039_09
EMAGE:10816 EMAGE:10816 EMAGE:10816 EMAGE:10816 EMAGE:10816
euxassay_003039_10 euxassay_003039_11 euxassay_003039_12 euxassay_003039_13 euxassay_003039_14
EMAGE:10816 EMAGE:10816 EMAGE:10816 EMAGE:10816 EMAGE:10816
euxassay_003039_15 euxassay_003039_16 euxassay_003039_17 euxassay_003039_18 euxassay_003039_19
EMAGE:10816 EMAGE:10816 EMAGE:10816 EMAGE:10816 EMAGE:10816
euxassay_003039_20 euxassay_003039_21 euxassay_003039_22 euxassay_003039_23 euxassay_003039_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:10816Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
10816_wholemount_strong.wlz
10816_wholemount_moderate.wlz
10816_wholemount_weak.wlz
10816_wholemount_possible.wlz
10816_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:10816_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4732
Entity Detected:2700062C07Rik, RIKEN cDNA 2700062C07 gene ( MGI:1915296)
Sequence:sense strand is shown

>T4732
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCGGACGCGTGGGTTTCGCAGCGTTTGAGCGACTGA
GTTCTCGAGCGATGCGGCAGAAGTATTACATTGAAGCGGCTGCTCGGGGCCTGGTGGGAAGCTGCCCGGG
CCAGGCTCGGTACCTCCTATGGGCCTACAGTTCGACACACGAGGATAACAGCACTTTCCAGGAAACATGT
CCACACTGCTTCCAATTGTTGGTTCTGGATAACTCTAGAGTGCGCCTCAAACCTAAAGCCAAATTGACAC
CAAAGATACAGAAACTTCTTAATCGGGAAGCAAGAAATGATACACTCAGTTTTAAAGAAGCAAAACTGTT
GAGAAAGTATAAAGACTCTACAAGTGTGCTGCTGATTACCTGTAGAACATGCAACAGAACAGTGAGACAC
CATGGTAAGAGTAGAAGCTTTCTGTGGGCTCTGAAGAGCAACGCCGCCACTGCTGCCAACAAAGCCAGCC
CGAAGACGCCAAAGAGAACGGCTCCAGGCTCTGCAAACCTCGGTCAGAGTACAAATGGTTCCAAAGGCAA
GAGTCCCTCCTTGACCATCAGAACACCTACATCTGGACAGTCAACACCCATTTGCTCCTCAAGGAATGGG
AGCAAAAGAAAGAAACACTTCTCTCAACTAAAAGCACTGCTTAGTCAGAGTGCATCTGACAAGAACCCAA
AGCTGGACTTCAGGCACTTCTTATCTTCTCTATGAAGAGAATGGCCTCTGAAAGAAAGAACTGTCTAGTG
CAGCTTTTGTCCTCACTTTGATGTCTGAGCACATGGAAACCAAGTCAAAAGCAAGCTGTTCTCGTCACCC
TTCAGTGCTGTGGGAAGTGCCTCATTAAACCAAGCCTCCTCGGCCTCCCTGGTGAATGTGAAGACCAAAA
AGTAAAGGACCAAAGGGAAAGGTACTGCTGCAGCCACGCCTACAGCTCTATCTTATCTCCAGGACCAACG
GAGCAGAAGGAACCCCAGCCTACAGGTTGTTCTCTGAGCTCCACATGAGTGCCCGCCCTGCAGCAGATGA
ATAAATGTAATAAACGGCTTTGAAAACTAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5038294 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5038294 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:10815 same embryo
 EMAGE:10817 same embryo
 EMAGE:10814 same embryo
 EMAGE:10813 same embryo
 EurExpress:euxassay_003039 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS