Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:10844

Pir pirin ( MGI:1916906)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:10844 EMAGE:10844 EMAGE:10844 EMAGE:10844 EMAGE:10844
"Pseudo-wholemount" of euxassay_003062. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_003062_01 euxassay_003062_02 euxassay_003062_03 euxassay_003062_04
EMAGE:10844 EMAGE:10844 EMAGE:10844 EMAGE:10844 EMAGE:10844
euxassay_003062_05 euxassay_003062_06 euxassay_003062_07 euxassay_003062_08 euxassay_003062_09
EMAGE:10844 EMAGE:10844 EMAGE:10844 EMAGE:10844 EMAGE:10844
euxassay_003062_10 euxassay_003062_11 euxassay_003062_12 euxassay_003062_13 euxassay_003062_14
EMAGE:10844 EMAGE:10844 EMAGE:10844 EMAGE:10844 EMAGE:10844
euxassay_003062_15 euxassay_003062_16 euxassay_003062_17 euxassay_003062_18 euxassay_003062_19
EMAGE:10844 EMAGE:10844 EMAGE:10844 EMAGE:10844 EMAGE:10844
euxassay_003062_20 euxassay_003062_21 euxassay_003062_22 euxassay_003062_23 euxassay_003062_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:10844Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
10844_wholemount_strong.wlz
10844_wholemount_moderate.wlz
10844_wholemount_weak.wlz
10844_wholemount_possible.wlz
10844_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:10844_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4863
Entity Detected:Pir, pirin ( MGI:1916906)
Sequence:sense strand is shown

>T4863
CGGACGCGTGGGCGGACGCGTGGGAAAGCGCTGAGTCACGCTGACTGACGGCTGGCGCTCCGCAAACCTG
TCCTCCCTTTGCTGTGTCCCTGCCGCTGTGGAGTCTAGGCACCTCCGACTGTGGCCTCCCTACTGGGCCT
GCGCTACTGCCCACTCAACATCAGAACTTTCTTTATAAACTTCAAAATGGCATCCTCTAAAAAGGTTACT
CTCTCAGTGCTCAGCCGGGAGCAGTCAGAGGGGGTAGGAGCACGTGTGCGCAGAAGCATTGGCAGACCCG
AGTTGAAAAATCTGGATCCATTTTTACTGTTTGATGAATTTAAAGGAGGAAGGCCGGGAGGATTTCCTGA
TCATCCACACCGAGGATTTGAAACAGTATCTTATCTTCTGGAAGGGGGCAGCATGGCCCATGAAGACTTT
TGTGGACATGTTGGTAAAATGAACCCAGGAGACCTACAGTGGATGACTGCAGGACGAGGCATTCTGCATG
CTGAGATGCCCTGCTCAGAGGAGCCAGCTCATGGCTTGCAGCTGTGGGTGAATTTGAGACGCTCAGAAAA
GATGGTGGCGCCTCAGTACCAGGAACTGAAAAGTGAAGAGATCCCGAAACCCACCAAAGATGGTGTGACA
GTTGCTGTCATTTCAGGAGAAGCCTTGGGAATAAAGTCGAAGGTTTACACTCGCACACCAACCTTATATC
TGGACTTCAAGTTGGACCAAGGAGCAAAGCATTCCCAGCCTATTCCTAAAGGGTGGACAAGCTTCATTTA
TACCATCTCTGGAGATGTATATATTGGGCCTGATGATGCTCAACAAAAGATAGAACCACATCACACAGCA
GTCCTTGGAGAAGGTGACGCTGTCCAGTTGGAAAATAAGGACCCCAAAAGAAGCCATTTTGTCTTAATTG
CTGGGGAGCCATTAAGAGAACCAGTTGTCCAACATGGTCCATTTGTGATGAATACCAATGAGGAAATTTC
TCAGGCCATTCTTGATTTCAGAAATGCAAAAAATGGTTTTGAGGGGGCCAGAACCTGGAAGTCAAAGATT
GGAAACTAATGAAGAGCTGAGACGCTGCCACTTGGATGGACTGGCCATTCAGTATATTCAATTTCCAAGG
CTAGTTTAGCTGGTGCTTCTGAAGCCACATTAAGCTGGGCTTAGTGGTGCAGTCCTTTAATCCCAGCACT
CTAGGAGTCAGAGACATTGGGTATCTCCAATTTCCAAGCCCATCTGTCTTGAAAATGGAAAAATAAAAAA
TAGAATTCCACATTAAAAAGATGTTTTTTGTAATGAATCTTCAGAATGCATTATATTTATGTTTGAAATT
GTCAAAGAATATGTTTAATTTAAAAAGGAGAACTACAAACAATAAAAAAATGGTAGTAACATATGTAAAA
TATTTCCTGATACATGCAAATAATTTTACTTGTTGCTTTAAAAAGAAATCAATGTTCTTCATTTGGTGGA
AATTATTAAGCACCTATTAAAAATAATTGCTATTTAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5067536 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5067536 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:10841 same embryo
 EMAGE:10842 same embryo
 EMAGE:10845 same embryo
 EMAGE:10840 same embryo
 EMAGE:10843 same embryo
 EurExpress:euxassay_003062 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS