EMAGE mouse gene expression spatial database

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EMAGE:10952

Slc35b3 solute carrier family 35, member B3 ( MGI:1913978)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_003609. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_003609_01	euxassay_003609_02	euxassay_003609_03	euxassay_003609_04

euxassay_003609_05	euxassay_003609_06	euxassay_003609_07	euxassay_003609_08	euxassay_003609_09

euxassay_003609_10	euxassay_003609_11	euxassay_003609_12	euxassay_003609_13	euxassay_003609_14

euxassay_003609_15	euxassay_003609_16	euxassay_003609_17	euxassay_003609_18	euxassay_003609_19

euxassay_003609_20	euxassay_003609_21	euxassay_003609_22	euxassay_003609_23	euxassay_003609_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10952_wholemount_strong.wlz

10952_wholemount_moderate.wlz

10952_wholemount_weak.wlz

10952_wholemount_possible.wlz

10952_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10952_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T6606
Entity Detected:	Slc35b3, solute carrier family 35, member B3 ( MGI:1913978)
Sequence:	sense strand is shown >T6606 GGCGCGCAGGGTCCGGCGTGTGAAGACCTTCCGGGGAGGTGGCGGCCGAGGCGGCCGTCGCGGGAGCAGA CCCGGAGGCGGAGACGGAGACCGAGGAGGTGACAGCGGCGGAGCTGGGAGGCCCAGCCAGCAGAAGAAAG ACAGGACGAAGCATCCGAAAAGAGCAGAGACCAAGTTGCAGGCCTTGACTGTGGCAGAGCAGAAACAATG GACCTCAAGTTCAACAACTCCAGGAAGTATGTCTCCATCTCAGTGCCCTCCAAAACGCAGGCCATGTCGC CGCATATCAAGTCAGTTGAGGACGTCGTGGTGCTGGGCGTGAACCTCAGCAAGTTTAGCAAGCTCACACA GTTTCTCATCTGTGTGGCTGGAGTTTTTGTATTTTACCTAATTTATGGATACTTACAGGAGCTGATCTTT TCAGTGGAAGGCTTTAAGCCTTACGGCTGGTACCTTACCTTAGTGCAGTTTGCCTTTTACTCCGTATTTG GCCTAATCGAGCTACAGCTCACTCAGGACAGAAGGAGAAGAATACCAGGAAAAACCTACATGCTAATAGC TTTTCTAACTGTGGGTACTATGGGCTTATCAAACACTTCCTTGGGCTACCTGAATTACCCAACCCAAGTC ATCTTCAAGTGCTGCAAACTGATTCCTGTTATGCTAGGAGGAGTTTTTATTCAAGGAAAGCGGTACAACC TTGCAGATGTGTCTGCCGCAGTGTGCATGAGCCTGGGCCTGATCTGGTTTACCCTCGCTGACAGCACAAT TGCACCAAACTTTAATCTGACAGGTGTGATGCTTATCTCCCTGGCGCTGTGTGCAGACGCTGTCATTGGG AACGTTCAGGAGAAGGCCATGAAACTGCACAATGCTTCCAACTCGGAGATGGTTTTGTATTCCTACTCAA TCGGGTTTGTGTACATTTTGCTGGGACTGTCATGCACTAGTGGACTGGGCCCTGCAGTGGCATTTTGTTC AAAGAACCCTGTTGGGACTTACGGCTACGCCTTCCTGTTTTCCCTCACTGGATACTTTGGGATCTCCTTT GTTCTGGCCCTCATTAAAATCTTCGGTGCACTTCTGGCTGTAACAGTGACAACAGGAAGGAAAGCAATGA CCGTTGTCCTGTCCTTCCTGTTCTTTGCTAAGCCGTTCACTTTTCAGTATATATGGTCTGGCTTGTTAGT TGTCCTTGGCATATTTCTCAATGTTTACAGCAAAAATATGGATAAAATAAGATTGCCATCGGTGTACAAC ATGATAAAGAAAGCCATGGACATGAAAAAGTCAAGGACGTTGGCACAGACTGTGTAGGAACTGCGTTCTC CTATTTAAAATAAAGCTCTGTGGGAACAACCATTAATCAATTCACTTTGCAAAGGCTTGTGATACAAACC AAAGGATCTGAAGGCCGCTGTCAGATGAGCAGATTGTACATCCAGTGGTTCCTTGGCATCCACCTCTACA GAATACAGGCTTTTGATCAACTCCAAATGATCAAGAGCCCACACCTAGGACGTGTTGCAATAAAGTCAGT ATGAAGGAAAGTGCTTCCTAGCAATGTTCTGAACATTTCACTGGAAATGGACCGTGTTGTAAGACTGATT GGAAATCCTCCCAGCCTGCAGCGCGGTACTGAGTGGCACTGTGTCTCCATTCCGTTTTGCTGGTGTTATT TAAATTCTTCTCTGTTATAAGAGTGAACTGATGATTTGAAGTGTAGAGAAAATACCATTCATTTATAAAT AAAATTATCCTGTGATTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:3596363 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3596363 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10955 same embryo
	EMAGE:10953 same embryo
	EMAGE:10956 same embryo
	EMAGE:10957 same embryo
	EMAGE:10954 same embryo
	EurExpress:euxassay_003609 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source