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EMAGE:11061

8430410A17Rik RIKEN cDNA 8430410A17 gene ( MGI:1914053)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11061 EMAGE:11061 EMAGE:11061 EMAGE:11061 EMAGE:11061
"Pseudo-wholemount" of euxassay_003075. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_003075_01 euxassay_003075_02 euxassay_003075_03 euxassay_003075_04
EMAGE:11061 EMAGE:11061 EMAGE:11061 EMAGE:11061 EMAGE:11061
euxassay_003075_05 euxassay_003075_06 euxassay_003075_07 euxassay_003075_08 euxassay_003075_09
EMAGE:11061 EMAGE:11061 EMAGE:11061 EMAGE:11061 EMAGE:11061
euxassay_003075_10 euxassay_003075_11 euxassay_003075_12 euxassay_003075_13 euxassay_003075_14
EMAGE:11061 EMAGE:11061 EMAGE:11061 EMAGE:11061 EMAGE:11061
euxassay_003075_15 euxassay_003075_16 euxassay_003075_17 euxassay_003075_18 euxassay_003075_19
EMAGE:11061 EMAGE:11061 EMAGE:11061 EMAGE:11061 EMAGE:11061
euxassay_003075_20 euxassay_003075_21 euxassay_003075_22 euxassay_003075_23 euxassay_003075_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11061Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11061_wholemount_strong.wlz
11061_wholemount_moderate.wlz
11061_wholemount_weak.wlz
11061_wholemount_possible.wlz
11061_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11061_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4678
Entity Detected:8430410A17Rik, RIKEN cDNA 8430410A17 gene ( MGI:1914053)
Sequence:sense strand is shown

>T4678
CTAGCTGCGAGGAAGGGTGGACTAGACCCTCGGGCGGTCTGAGCGGCAGCGCTGAAGTATGTGCGGGCGA
ACGTCCTGTCACTTGCCCAGAGAGGTTCTCACCAGGGCCTGCGCCTATCAGGATCGGCAGGGCCGGCGGC
GGCTCCCGCAGTGGAGGGACCCCGACAAGTACTGCCCCTCCTACAACAAGAGCCCGCAGTCCAGCAGCCC
CGTGCTGCTCTCCAGACTGCACTTTGAGAAGGATGCAGACTCATCAGATCGGATAATTATTCCCATGCGA
TGGGGCTTAGTCCCATCTTGGTTCAAAGAAAGTGATCCTTCTAAGCTGCAGTTCAACACTACCAACTGTC
GTAGTGATACCATAATGGAGAAGCAGTCATTCAAGGTTCCTCTGGGGAAAGGACGGCGGTGTGTTGTTTT
AGCAGATGGATTCTACGAGTGGCAGCGGTGTCAGGGAACAAACCAGAGGCAACCATACTTCATCTATTTT
CCTCAAATCAAGACAGAGAAGTCAGGTGGGAACGATGCTTCAGACAGCTCTGACAACAAGGAAAAGGTCT
GGGACAACTGGAGGCTGCTGACAATGGCAGGGATCTTTGACTGCTGGGAAGCGCCAGGGGGAGAGTGCCT
GTATTCCTACAGCATCATCACTGTGGATTCCTGCAGAGGTTTGAGTGACATCCACAGCAGGATGCCTGCC
ATACTAGATGGAGAAGAAGCAGTCTCCAAATGGCTCGACTTTGGTGAGGTCGCCACTCAGGAAGCTCTGA
AGCTAATCCACCCCATAGACAATATCACCTTCCATCCAGTTTCTCCAGTGGTGAACAATTCCCGAAACAA
CACTCCGGAGTGTCTGGCGCCTGCTGACTTGCTGGTTAAGAAGGAGCCCAAGGCAAATGGCAGCAGTCAA
AGGATGATGCAGTGGCTGGCTACAAAGTCACCCAAAAAGGAAGTCCCTGACTCACCCAAAAAGGATGCAT
CAGGTCTACCCCAGTGGTCCAGCCAGTTTCTCCAGAAGAGCCCATTGCCTGCTAAAAGAGGTGCTACCAG
CAGCTTCCTGGATCGATGGCTGAAGCAGGAGAAGGAGGATGAGCCCATGGCCAAGAAGCCTAACAGCTAG
GCTCCATACCAGGCCTCAGCCTGATACAGCATTACTGTTGTCACCAGTTGACTGGAATTGTAACCTTTTA
CTTGGGAATGTGGTGGCCCAATGTCAGCTGACCTGAAAGAACATGGCTACCGTGAGACAGCCCTGTGGGC
CCTGCTACCCCTCCTATTTCTGCCTCCCTGCTGGGAGCTTTCCTGTTCCCTGGTGTTCCACGAAGGAGGC
TCTTCTCAGTCTCTGGGCTCTCCTTTAGAGTTAAGGTCTTAAAATGTATTTTGTCCTAAATAAACTGCGT
TTGGTAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5026919 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5026919 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11063 same embryo
 EMAGE:11067 same embryo
 EMAGE:11062 same embryo
 EMAGE:11066 same embryo
 EMAGE:11064 same embryo
 EMAGE:11065 same embryo
 EurExpress:euxassay_003075 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS