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EMAGE:11649

Ccdc85b coiled-coil domain containing 85B ( MGI:2147607)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11649 EMAGE:11649 EMAGE:11649 EMAGE:11649 EMAGE:11649
euxassay_008400_01 euxassay_008400_02 euxassay_008400_03 euxassay_008400_04 euxassay_008400_05
EMAGE:11649 EMAGE:11649 EMAGE:11649 EMAGE:11649 EMAGE:11649
euxassay_008400_06 euxassay_008400_07 euxassay_008400_08 euxassay_008400_09 euxassay_008400_10
EMAGE:11649 EMAGE:11649 EMAGE:11649 EMAGE:11649 EMAGE:11649
euxassay_008400_11 euxassay_008400_12 euxassay_008400_13 euxassay_008400_14 euxassay_008400_15
EMAGE:11649 EMAGE:11649 EMAGE:11649 EMAGE:11649 EMAGE:11649
euxassay_008400_16 euxassay_008400_17 euxassay_008400_18 euxassay_008400_19 euxassay_008400_20
EMAGE:11649 EMAGE:11649 EMAGE:11649 EMAGE:11649
euxassay_008400_21 euxassay_008400_22 euxassay_008400_23 euxassay_008400_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11649Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11649_wholemount_strong.wlz
11649_wholemount_moderate.wlz
11649_wholemount_weak.wlz
11649_wholemount_possible.wlz
11649_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11649_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8562
Entity Detected:Ccdc85b, coiled-coil domain containing 85B ( MGI:2147607)
Sequence:sense strand is shown

>T8562
CCCAGGGTAGCTGCTGCAGCCTACGCTGCCTCTTCCACTGCCTACGGTCCTCGGAGCCAGAGCCCGGGTC
GGAGCCTGAGAGGCAACCGGCCCGAGGAGGGGCTCCAGAGCCTCGGCCGTGGGCGGGCGATGCTGCAGCT
GCCTGATCAACTATGGAGGCCGAAGCAGGCGGCCTGGAGGAGCTGACGGACGAGGAGATGGCGGCGCTGG
GTAAGGAGGAGCTGGTGCGGCGCCTGCGGCGGGAGGAGGCGGCGCGCCTGGCAGCGCTAGTGCAGCGCGG
CCGCCTGATGCAGGAGGTGAATCGGCAGCTGCAGGGTCACCTGGGCGAGATCCGTGAGCTCAAACAGCTC
AACCGGCGCCTGCAGGCGGAGAACCGGGAGCTGCGCGACCTCTGCTGCTTTCTGGACTCGGAGCGCCAAC
GAGGACGGCGTGCGGCGCGCCAGTGGCAGCTCTTTGGGACCCAAGCATCCCGGGCGGTGCGCGAGGACCT
GGGTGGCTGTTGGCAGAAGCTAGCGGAGCTGGAAGGCCGCCAGGAGGAGCTGCTGCGGGAAAATCTGGCC
CTTAAGGAGCTTTGCTTAGCACTGGGCGAAGAGTGGGGCCCCCGCGGTGGCCCCGGCGGCGCAGTGGGCT
CAGGTGCTGGGCCCACACCCGAGCTCGCCCTGCCACCGTGCGGGCCCCGCGACCTAGGCGATGGAAGTTC
CAGCACTGGCAGTGTGGGCAGCCCGGATCAGTTGCCCCTAGCCTGCTCCCCTGATGACTGAGGGCGCCGC
ATTTTCCACGCCAATGCCTGCCTGGATTGCTCCCTGAGCTCGGGGAATGCTGTGGACCTCCAGACCTGGT
CGTAGCTTCGGCTGAGCACCAGGGCGCTGGAATGGACTGGAAAAGCCCTGGCACTGAGGAGGGCTCCTTG
CTCTTGCTGGCAGAGCAGCAGGGGAAATGGAGGCTGAAGTGGAGGGACTTGCTGTGTGGTTGGGTGGGGA
CTAATAAACTGGGAAGGAAGCAGAGCCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5710206 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5710206 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11650 same embryo
 EMAGE:11648 same embryo
 EMAGE:11652 same embryo
 EMAGE:11651 same embryo
 EMAGE:11647 same embryo
 EurExpress:euxassay_008400 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS