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EMAGE:14165

Ngb neuroglobin ( MGI:2151886)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14165 EMAGE:14165 EMAGE:14165 EMAGE:14165 EMAGE:14165
"Pseudo-wholemount" of euxassay_001857. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_001857_01 euxassay_001857_02 euxassay_001857_03 euxassay_001857_04
EMAGE:14165 EMAGE:14165 EMAGE:14165 EMAGE:14165 EMAGE:14165
euxassay_001857_05 euxassay_001857_06 euxassay_001857_07 euxassay_001857_08 euxassay_001857_09
EMAGE:14165 EMAGE:14165 EMAGE:14165 EMAGE:14165 EMAGE:14165
euxassay_001857_10 euxassay_001857_11 euxassay_001857_12 euxassay_001857_13 euxassay_001857_14
EMAGE:14165 EMAGE:14165 EMAGE:14165 EMAGE:14165 EMAGE:14165
euxassay_001857_15 euxassay_001857_16 euxassay_001857_17 euxassay_001857_18 euxassay_001857_19
EMAGE:14165 EMAGE:14165
euxassay_001857_20 euxassay_001857_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14165Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14165_wholemount_strong.wlz
14165_wholemount_moderate.wlz
14165_wholemount_weak.wlz
14165_wholemount_possible.wlz
14165_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14165_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4950
Entity Detected:Ngb, neuroglobin ( MGI:2151886)
Sequence:sense strand is shown

>T4950
GCCACCGTAGCTTTAATGGGCGGTTCTCTGGGAGCTTCGGGGTGTAGGGCGCAGCTGCCCAAGCGGGGTC
CCCGGAAGCGCCCGAGGCCAAGCTGGCCGTGCGCATCCTCTGGGCTGGACCAGTAAAGGCGCAGTTGCTG
GGCCCCACCCAACTAAGGCACTGGGCCTGGAGGGGGGCTCCCCCGCGTCGCCGAGGAGATGGCGCTGCAT
GTGCGTTGACTGCACCCACGCCTCGAGGGTCCCATCACTGCGTCCCGCGAGTCTCCTGGGAGAGAGAGCA
TGGAGCGCCCGGAGTCAGAGCTGATCCGGCAGAGCTGGCGGGTAGTGAGCCGCAGCCCTCTGGAACATGG
CACTGTCCTGTTCGCCAGGCTCTTCGCCCTGGAACCCAGCCTGCTGCCTCTCTTCCAGTACAATGGCCGC
CAGTTCTCCAGCCCTGAGGACTGTCTCTCCTCTCCAGAATTCCTGGACCACATTAGGAAGGTGATGCTAG
TGATTGATGCTGCAGTGACCAACGTGGAGGACCTGTCTTCATTGGAGGAGTACCTGACCAGCTTGGGCAG
GAAGCATCGGGCAGTGGGAGTGAGGCTCAGCTCCTTCTCGACAGTAGGCGAGTCCCTGCTCTACATGCTG
GAGAAGTGCCTGGGTCCCGACTTTACACCAGCTACAAGGACCGCCTGGAGCCGACTCTACGGAGCTGTGG
TGCAAGCCATGAGCCGAGGCTGGGATGGGGAGTAAGAGACGAGCCAGTGCCCCTATCTATGTGTGTCTGT
CTGTTGATCTGCCTGTTGTAGTCTTAGCCTCTCCCCCAGGGTCTCTCTATACCTTGGTCCTCATCCCCTT
GGCCATCCTAGAGAGGTGATGGGAGAGGGCTCTGTCTCAGCTTCTGGTCAGCTGCAGGGAGGTGGATTTC
CTTCCCTCATCCCCATAGATGTCCTGCTGCATGCCTGGTTAGCTCGCCCCAGGAGGCAGAACAATTTGGG
TAGTGAGGTGGCATGGGGGTTCTTCTCAGAGAAGCTTTCTGCCAAGGTGAGGGAAAAGTGACTAGGCTTC
TAGAATTTTCCACCTTGCCTGCCCAGTCTCTCTGATACTTCCCTGCCAAGCTGTTTACTTTCCAACAATG
AAGAGGAGAGACTTTTTAGTGTTTCTCAGGCAAGGGAAGCATAGAAGATGGCATTCTTCAGTGGCATTGG
GCAGTGGCTCAGCTGCTCAGACGCCCCATACAAAACCTCTTGTGCTCTTGGTTCAGCATTTCTGGTGGAA
GCACCCCGGTATTCTTTTGGGGGAAACCTAACTGGCCAGCCATAATGGAGAGGCCAGAAGGGCAAGGAGG
AGGAGTGACCTCATCCCAAATGGCATGGAATTCTGGGGCTCTTCCTGCCACTTAATTGTAGAAGGGCTGA
ATCCTGTCTCCCCACCCTCTTCTGCTCACCCACCGCTCTCCAGCTGTGGGCCCCTAGCTCTATGTTTAAT
GCTTGAGGTGTACTCGTGCCTGGGCTGATGAGTGGGAGAGAATAGAGTAGGGAGGGCCCTTGTACCCATC
CCCAGCCACCCACACTTTCTTGCTCTGTGCTGTGGCTCTATAAACTCACAAGAAATAAACATGTTCTGTG
TGCTGAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5133442 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5133442 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14167 same embryo
 EMAGE:14168 same embryo
 EMAGE:14166 same embryo
 EMAGE:14164 same embryo
 EurExpress:euxassay_001857 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS