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EMAGE:14199

Uqcrfs1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 ( MGI:1913944)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14199 EMAGE:14199 EMAGE:14199 EMAGE:14199 EMAGE:14199
"Pseudo-wholemount" of euxassay_004001. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004001_01 euxassay_004001_02 euxassay_004001_03 euxassay_004001_04
EMAGE:14199 EMAGE:14199 EMAGE:14199 EMAGE:14199 EMAGE:14199
euxassay_004001_05 euxassay_004001_06 euxassay_004001_07 euxassay_004001_08 euxassay_004001_09
EMAGE:14199 EMAGE:14199 EMAGE:14199 EMAGE:14199 EMAGE:14199
euxassay_004001_10 euxassay_004001_11 euxassay_004001_12 euxassay_004001_13 euxassay_004001_14
EMAGE:14199 EMAGE:14199 EMAGE:14199 EMAGE:14199 EMAGE:14199
euxassay_004001_15 euxassay_004001_16 euxassay_004001_17 euxassay_004001_18 euxassay_004001_19
EMAGE:14199 EMAGE:14199
euxassay_004001_20 euxassay_004001_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14199Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14199_wholemount_strong.wlz
14199_wholemount_moderate.wlz
14199_wholemount_weak.wlz
14199_wholemount_possible.wlz
14199_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14199_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5003
Entity Detected:Uqcrfs1, ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 ( MGI:1913944)
Sequence:sense strand is shown

>T5003
CCCGCTCCTCTTCGGGCCGTCGTTCGAACGAAAGGTCGTCCCTGTGACCGACGAGGTGGTTTGAGCAGCT
GTCGCCATGTTGTCGGTCGCCGCCCGCTCGGGCCCGTTCGCGCCCGTCCTATCGGCCACTTCCCGCGGGG
TGGCGGGCGCGCTGCGTCCTCTGCTGCAAGGCGCGGTGCCCGCCGCCTCGGAGCCACCTGTTCTGGATGT
GAAGCGACCCTTCCTGTGCCGCGAGTCCCTGAGTGGCCAGGCCGCAGCCCGGCCTTTGGTGGCCACGGTG
GGCCTGAACGTTCCTGCTTCTGTCCGTTTTTCCCATACAGATGTCAAGGTGCCCGACTTCTCTGACTATC
GTCGTGCTGAAGTTCTTGATAGCACAAAATCTTCTAAAGAAAGCAGTGAGGCTAGAAAAGGCTTCTCTTA
CCTGGTAACTGCAACTACTACTGTGGGTGTTGCTTATGCGGCCAAAAATGTGGTCTCCCAGTTTGTTTCC
AGCATGAGTGCTTCTGCTGACGTACTGGCCATGTCGAAGATCGAGATCAAGTTGTCTGATATCCCTGAAG
GGAAGAACATGGCTTTTAAATGGAGAGGCAAACCTCTGTTTGTGCGCCATAGAACCAAGAAGGAGATTGA
CCAGGAAGCTGCAGTCGAAGTGTCCCAGTTAAGGGACCCACAGCATGATTTAGATCGAGTAAAGAAACCT
GAATGGGTTATTCTGATAGGTGTCTGTACTCATCTTGGTTGTGTACCCATTGCAAACGCAGGAGATTTTG
GTGGCTATTATTGCCCCTGCCATGGGTCACACTATGACGCCTCTGGCAGGATCAGGAAGGGCCCTGCACC
TCTCAACCTGGAAGTGCCTGCCTACGAGTTCACCAGTGATGATGTAGTTGTTGTGGGTTAGACACGTGGA
CTCAGGGCCTAGGTTTCTGTCGGTCTTCAGGTCCCCTCAGAAGAGTGGAGAGTAAGCCTTGTGTACGTCT
AGGTTGGTTGATTTAAAATATTTAAGAATTGTTAATAATGTATTGGCAAACATTAATGTGAAGTAATTGA
ATTCACTGTTAAATATTATCAAGCATTAGCATAATAAAACCACTGTTGAACATCATTAGATTCAGTCATA
GACTTGAAAGGTGCAATGTCTTTGATAGCTAATTCTAATAAAACATTACAGATTGTTGTAAAAAAAAAAA
AAAA
Notes:The probe template was PCR amplified from IMAGE:5249225 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5249225 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14195 same embryo
 EMAGE:14200 same embryo
 EMAGE:14197 same embryo
 EMAGE:14198 same embryo
 EMAGE:14196 same embryo
 EurExpress:euxassay_004001 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS