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EMAGE:14439

Dclre1b DNA cross-link repair 1B, PSO2 homolog (S. cerevisiae) ( MGI:2156057)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14439 EMAGE:14439 EMAGE:14439 EMAGE:14439 EMAGE:14439
"Pseudo-wholemount" of euxassay_004245. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004245_01 euxassay_004245_02 euxassay_004245_03 euxassay_004245_04
EMAGE:14439 EMAGE:14439 EMAGE:14439 EMAGE:14439 EMAGE:14439
euxassay_004245_05 euxassay_004245_06 euxassay_004245_07 euxassay_004245_08 euxassay_004245_09
EMAGE:14439 EMAGE:14439 EMAGE:14439 EMAGE:14439 EMAGE:14439
euxassay_004245_10 euxassay_004245_11 euxassay_004245_12 euxassay_004245_13 euxassay_004245_14
EMAGE:14439 EMAGE:14439 EMAGE:14439 EMAGE:14439 EMAGE:14439
euxassay_004245_15 euxassay_004245_16 euxassay_004245_17 euxassay_004245_18 euxassay_004245_19
EMAGE:14439 EMAGE:14439 EMAGE:14439 EMAGE:14439
euxassay_004245_20 euxassay_004245_21 euxassay_004245_22 euxassay_004245_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14439Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14439_wholemount_strong.wlz
14439_wholemount_moderate.wlz
14439_wholemount_weak.wlz
14439_wholemount_possible.wlz
14439_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14439_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6093
Entity Detected:Dclre1b, DNA cross-link repair 1B, PSO2 homolog (S. cerevisiae) ( MGI:2156057)
Sequence:sense strand is shown

>T6093
TCTAGATGAAATTGGGCAAGAAACCATGACTGTAACGCTCATAGATGCCAATCACTGCCCTGGTTCTGTC
ATGTTTCTCTTTGAAGGATACTTTGGAACAATTCTATACACAGGTGATTTTCGATATACACCATCCATGC
TGAAGGAACCTGCTCTGATACTGGGGAAACAGATTCATACTTTGTATCTAGACAACACTAATTGCAATCC
AGCCCTGGTTCTTCCTTCCCGACAAGAGGCTACTCAGCAGATTGTCCAGCTAATCCGACAGTTCCCACAA
CACAACATAAAAATTGGACTCTATAGTCTAGGAAAAGAATCACTGCTGGAGCAACTAGCCCTTGAGTTTC
GGACCTGGGTGGTATTAAGTCCTCAACGCCTGGAGTTGGTACAGTTGCTGGGCCTGGCAGACGTGTTCAC
AGTTGAGGAAGAAGCCGGGCGCATCCATGCTGTGGACCATACGGAGATCTGCCATTCTGCCATGCTTCAG
TGGAACCAGAGTCACCCTACCATTGCTATTTTCCCCACAAGCCGGAAAGTGCGCAGCCCTCACCCCAGCA
TCTACACCGTCCCGTACTCTGACCACTCATCTTACTCCGAGCTCCGTGCTTTTGTGGCGGCGCTGAGGCC
CTGTCAGGTGGTGCCCATCGTCCATCAAAAGCCTTGTGGAGAGTTCTTTCAGGACAGCTTGAGTCCTAGG
CTCGCTATGCCTCTGATTCCACACTCTGTGCAGCAGTACATGAGTTCCTCCTCTAGGAAAACAAATGTGC
TTTGGCAGTTAGAAAGGAGGCTCAAGAGGCCAAGAACTCAGGGTGTTGTGTTTGAATCCCCTGAGGAGAA
AGCTAATCAGGTTAAAGTTGACAGAGACTCAAAGAAGCACAAAAAAGAAAACCTCTCTCCCTGGGCTGGG
CACCTTGAGAGGCTTTGCCCCCATCCTCTGCAGGCCAGGAAGCAGTTGTTCCCAGACTTCTGCAGGAAAG
AACGTGATGAGCCAGTCCTCTTTTGTGACTCCAACAAGATGGCGACTGTGTTGACTGCCCCACTGGAATT
CTCAGTGCAATTACAACCTATAGATGAGTTTCTCTTTCCAGAAACCAGGGAGAAAATTGGCTTAGAGTCC
CCATTGCTATCAAGGGGAGACAGTGGCTCACCAGCGAGAGGGAACCAAAGTGACTGCGTAGGCTGTGGTT
CTCCCCCGGCTCACATTAGCAGAGCTGTTCCTCTAACTCCTGAGTCCAGGGGCCTGGCGCTAAAATACCT
TCTCACTCCAGTGCATTTCCTCCAAGCAGGGTTCTCTTCCAGGAACTTCGACAAGCAAGTGGAAAAACAC
CAGAGAGTACAGCGTAGCAGTCCTGCAGTTCTGAGCCCGGTGGATGTTGGCTAGTGACAGGAGGTGGCTT
GGTGTCTTCCTTTAAAAGAACCCTGGGGCTCACCCCAGCAGCTCTTCTGAAGCTTTTCATGAAGTCCTAG
TGCCTATGAGACCCGTAGCTTTATAGTACACTATATTGTTTATTTTAATTTTATTATATTTAAGAAACAG
ATTTCATTATAAACTATTCAGTGTTCATAAGCACATTAAAAGTTCTAAGAAGTTCAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3493038 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3493038 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14442 same embryo
 EMAGE:14441 same embryo
 EMAGE:14437 same embryo
 EMAGE:14440 same embryo
 EMAGE:14438 same embryo
 EurExpress:euxassay_004245 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS