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EMAGE:14442

Vta1 Vps20-associated 1 homolog (S. cerevisiae) ( MGI:1913451)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14442 EMAGE:14442 EMAGE:14442 EMAGE:14442 EMAGE:14442
"Pseudo-wholemount" of euxassay_004238. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004238_01 euxassay_004238_02 euxassay_004238_03 euxassay_004238_04
EMAGE:14442 EMAGE:14442 EMAGE:14442 EMAGE:14442 EMAGE:14442
euxassay_004238_05 euxassay_004238_06 euxassay_004238_07 euxassay_004238_08 euxassay_004238_09
EMAGE:14442 EMAGE:14442 EMAGE:14442 EMAGE:14442 EMAGE:14442
euxassay_004238_10 euxassay_004238_11 euxassay_004238_12 euxassay_004238_13 euxassay_004238_14
EMAGE:14442 EMAGE:14442 EMAGE:14442 EMAGE:14442 EMAGE:14442
euxassay_004238_15 euxassay_004238_16 euxassay_004238_17 euxassay_004238_18 euxassay_004238_19
EMAGE:14442 EMAGE:14442 EMAGE:14442 EMAGE:14442
euxassay_004238_20 euxassay_004238_21 euxassay_004238_22 euxassay_004238_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14442Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14442_wholemount_strong.wlz
14442_wholemount_moderate.wlz
14442_wholemount_weak.wlz
14442_wholemount_possible.wlz
14442_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14442_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7171
Entity Detected:Vta1, Vps20-associated 1 homolog (S. cerevisiae) ( MGI:1913451)
Sequence:sense strand is shown

>T7171
GTAGCGCTTCCGGGAGTGGAGATGGCCGCGCTGGCCCCTCTGCCGCCGCTGCCCGCGCAGTTTAAGAGCA
TACAGCACCATTTGAGAACGGCGCAGGAGCATGACAAGCGGGACCCCGTGGTGGCCTACTACTGTCGTTT
ATATGCTATGCAAACTGGAATGAAGATTGATAGTAAAACTCCTGAGTGTCGTAAATTTTTATCAAAGCTA
ATGGATCAGTTAGAAGCTCTTAAAAAACAGTTGGGGGATAATGAAGCTGTTACTCAAGAAATAGTTGGTT
GTGCCCATTTGGAAAATTATGCTTTGAAAATGTTCTTGTATGCAGACAATGAAGATCGAGCTGGACGATT
TCACAAAAACATGATCAAGTCCTTCTACACTGCCAGCCTTTTAATAGATGTCATCACAGTGTTTGGTGAA
CTCACAGATGAAAATGTGAAACATAGAAAGTATGCAAGGTGGAAGGCAACATATATTCATAACTGCTTAA
AGAATGGGGAGACTCCTCAAGCAGGCCCTGTTGGAATAGAGGAAGAGAATGATGTTGAAGAAAATGAAGA
TGTTGGCGCAACCTCTCTGCCCACTCAGCCACCTCAGCCATCATCATCTTCAGCATACGACCCAAGCAAC
TTGGCACCAGGCAGCTACAGTGGCATACAGATTCCTCCAGGTGCACATGCTCCAGCTAATACCCCTGCAG
AAGTGCCACACAGCACAGGTGTAACGAGTAATGCCGTCCAGCCTAGTCCACAGACTGTCCCAGCTGCTCC
AGCTGTTGATCCTGACCTGTACACAGCTTCCCAGGGGGATATCCGCCTGACCCCGGAGGACTTCGCTAGA
GCTCAGAAGTACTGCAAGTATGCTGGCAGTGCCCTGCAGTATGAAGATGTGGGCACCGCTGTGCAGAACC
TCCAGAAGGCCCTCAGGCTGCTGACCACAGGCAGGGAGTGAAGCCTCTGTTCACGGAAGCCAGTGTTTTC
CGCATAGAGAACTAACAGTCCGTTACACTTTCCTCAGCCTTCAGGAGCAGGGGACTACAGAAGGCCTCAG
TTCCCCGAGGAAGACAATGACTCCTGTGTGGTTCAGAAGCATTTACCAGCTGCCTCAGCCAGTTGTCATT
GAGTGTGTAGAGCTGATGCTAGCATCGAACCCGCTGTGAAATGTCCCTGTAGAAAATCATGTTGGGTATA
ATATGCTTTCTTAATTTATACACACTAAAGGAAGTTTTTGAAAGATCTGTAATATTTGGACAAACAAACC
ATATTATGTTGCTTTAATATTCTAAATTAAACTTTTAATAAAGATTACAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4034998 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4034998 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14441 same embryo
 EMAGE:14439 same embryo
 EMAGE:14437 same embryo
 EMAGE:14440 same embryo
 EMAGE:14438 same embryo
 EurExpress:euxassay_004238 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS