EMAGE mouse gene expression spatial database

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EMAGE:14607

Abhd16b abhydrolase domain containing 16B ( MGI:3607711)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_005454. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_005454_01	euxassay_005454_02	euxassay_005454_03	euxassay_005454_04

euxassay_005454_05	euxassay_005454_06	euxassay_005454_07	euxassay_005454_08	euxassay_005454_09

euxassay_005454_10	euxassay_005454_11	euxassay_005454_12	euxassay_005454_13	euxassay_005454_14

euxassay_005454_15	euxassay_005454_16	euxassay_005454_17	euxassay_005454_18	euxassay_005454_19

euxassay_005454_20	euxassay_005454_21	euxassay_005454_22	euxassay_005454_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

14607_wholemount_strong.wlz

14607_wholemount_moderate.wlz

14607_wholemount_weak.wlz

14607_wholemount_possible.wlz

14607_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:14607_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9897
Entity Detected:	Abhd16b, abhydrolase domain containing 16B ( MGI:3607711)
Sequence:	sense strand is shown >T9897 GCCTCCGCAGACACCGGCTGGGCCAGGCCTGCATCTCCAGCTGTCATTTCACAACTAGGACTGGGCCTTC AGGGAACAGCTCAGATCTTCAGTGCCCATGTGTGTCATCTGCTTTGTGAAGGCACTAGTGCACGTGTTCA AGATCTACTTGACAGCAAACTACAGTTACAACTTCCGCAGCTGGCCGGTGGACTTCCGCTGGGATGACCT GCATGCCCCAAGCACTGGTAATAGCAGTCAACGTGCGTTGACCTGTGCTGCAGCTGCTGCAGGTGTGTGG CTGCTACACGATGCTGCACTGGGAGGCGACACACTCACAAGGCCTCCACGTGGAGCTCGGAGCCAAGTGC AGTGCCTCCTCCAGCAGATCCGTGAGCTGCCCAGCCAGCTTGCTAGCTATGCACTGGCCCACTCACTGGG CCGCTGGCTTGTATACCCCGGTTCTATGTTCTTGATGACGCGTGCATTAATGCCTCTACTACAGCAGGGC CAGGAGCGACTAGTGGACCGCTACCGTGGGCGGCGTGCCAAGCTGGTGGCCTGCGACGGCAATGAGATTG ACACCATGTTCATGGATCGCCGTCAGCATCCCGGCAGCCATGGCCGCGGCCTTTGTCTGGTCATATGCTG TGAAGGGAATGCTGGCTTCTATGAGATGGGCTGCCTGTCCGCACCTCTGGAGGCTGGATACTCAGTGCTA GGCTGGAACCACCCTGGCTTTGGAGGCAGCACAGGTGCACCTTTCCCACAACATGATGCAAATGCAATGG ATGTAGTGGTCAAATATGCGCTGCACCGTTTGAACTTCCCGCCAGCACACGTGGTGGTTTATGGCTGGTC TATAGGAGGCTTCACAGCCACTTGGGCCACCATGACTTACCCAGAACTGGGTGCACTAGTGCTGGACGCC ACCTTTGATGATCTGGTGCCACTAGCGCTGAAGGTTATGCCCCAGAGTTGGAAAGGGCTGGTAGTACGCA CTGTACGGGAACACTTCAATCTCAATGTTGCTGAGCAGCTGTGCTGCTACCCAGGCCCAGTACTCTTGCT CAGACGTACACAAGATGATGTTGTCAGCACCTCGAACCATATACCCTCGATGCCATCTTGCCAAGTGGAG GGGGATGTGGAAGGTAACCGTGGCAATGAGCTGCTGTTGCGCCTTCTACAGCACAGATATCCCTCTGTGA TGGCTCGCGAGGGCCGCACCGTGGTAACCCGCTGGCTACGTGCCAGCAACTTGGCTCAAGAAACTGCATT ATATGCACGCTACCGCGTTGATGATGAGTGGTGCTTAGCAACACTTCGTTCTTATCGTGAGAGATGCCAG AAGGAGCTGGACGATGCCGAGGCCTGGGGGCCACACGGACTTTCCTTTCCTTGGTTCGTGGGCCAAGGTC TGAGTGCCCGGCGGCGCCGGCAGCTTGCACTGTTCTTGGCACGCAGGCACCTTAAGAACCTGGAGGCAAC TCACTGCAGTCCACTGGAGCCTGAGGACTTCCAATTGCCCTGGAGACTATAGCCACTGTTACTGTGACTC ATGCATTTGGGCATCTGTACACGTTCTAGCTCCCCCCAACTGTTCCTCTCCTTACATCTATACAGAAAAG CTGGCCGTGCTGGGGATCTTGGTGTCTGGGAGAGTAGGCAGTATATCTTCCTTCACTTTCTTTCTGTTCT TTCCTGCTTCCATCCTTTCTCTTCCTTGCAAACATCTGAATGTCTGTGCCTAATTCTTAAAAGCAATGTA AAGATGACCCTGATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6774737 using vector (pDNR-LIB) specific primers. Forward Primer - name:M13 forward (-21), sequence:TGTAAAACGACGGCCAGT; Reverse Primer - name:T3-pDNR-LIB rv, sequence:CAAATTAACCCTCACTAAAGGGTGTTCACTTACCTACTGGGC. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6774737 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:14609 same embryo
	EMAGE:14606 same embryo
	EMAGE:14605 same embryo
	EMAGE:14608 same embryo
	EMAGE:14604 same embryo
	EurExpress:euxassay_005454 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source