EMAGE mouse gene expression spatial database

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EMAGE:14639

Snx19 sorting nexin 19 ( MGI:1921581)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_005575. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_005575_01	euxassay_005575_02	euxassay_005575_03	euxassay_005575_04

euxassay_005575_05	euxassay_005575_06	euxassay_005575_07	euxassay_005575_08	euxassay_005575_09

euxassay_005575_10	euxassay_005575_11	euxassay_005575_12	euxassay_005575_13	euxassay_005575_14

euxassay_005575_15	euxassay_005575_16	euxassay_005575_17	euxassay_005575_18	euxassay_005575_19

euxassay_005575_20

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

14639_wholemount_strong.wlz

14639_wholemount_moderate.wlz

14639_wholemount_weak.wlz

14639_wholemount_possible.wlz

14639_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:14639_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T8758
Entity Detected:	Snx19, sorting nexin 19 ( MGI:1921581)
Sequence:	sense strand is shown >T8758 GCCGGCAAAGTTTTCCTCATCTCGGCTGGAACAGGCTAGTTGATGGGCCCTGTCGACAGAAGCGAGCGGG AGAAGCAGAGCTTTTTCTGTCGCTCTGCAGTGCCAGTAGTATCGAAGGTCCAGAGTTCACTCAGTAGCAG CTGGACTTGTTCTCTTCGGTGACAGTTCATGCTCCCACTCCTGACACCAAAATAAAATCGGAGGCTGTCA TCTGTGGAAACATACCTGTCCTTTCAACCATGAAGGCACAAACAGTGTCCCCTACCCAGGGGACTATCTC CGAGTCCAGTTATGTCCACAGCAATCTATGGAGTAGCCGGAAGCTAATGATCGTGGGGGTCTTGGTGGGC TGGCTACTGGTCATCCACCTTCTGGTCAACATGTGGCTTCTGATCCTTCTATGTGCATCGCTGGTAGCGC TGGGAGGATGGCTGGGCTCCACTGCCATCCTAGGGGCTTCAGGTCAATTGCACCTGGAACGATTCATTAC CATCACCACCTGTCCTCCATGTCCCGAGGCAGAAAGGCAGCTGGAACAGGAGATTAACCGCACTATCCAG ATGATTATCCGAGACTTCGTGTTATCCTGGTATCGTTCTGTGAGCCATGAGCCGGCCTTCGAGGCAGAGA TGGAGGCAGCCATGAAAGGGTTGGTTCAGGAGCTTCGAAGGCGGATGAGCATAGTGGACAGCCATGCTCT TACCCAGAGGGTTCTGACTCTCTGTGGTTGTCACCTGCAGAGCTATATTCAGGCAAAGGAGGCTACTGCA AAGGAGCAGAGCTGTCCAGTTCAGCCCTCCCAGCTGTGGGATGCTTACTGCCAGGTTACAGCTCCCCATC CTGCCATGAGCTGTCCCACCACGGAGGTCACTTATGCACGTGGCATTGTGAACTTGATACTAAAAGAGTT AGTGCCCAAGCCCCACCTGGAGACGAGGACTGGACGCCACGTTGTGGTTGAAGTTATTACTTGCAATGTC ATCTTACCACTGATCAGCAAGCTATCAGATCCTGACTGGATCCACCTTATTCTTGTGAGTATCTTTTCCA AGTACAGACATGATGCAGCACAGGGAACTAAACCCCCCTGCTCATCCAGTGTCCTAGAGCAGCCCTCGGT GCCCACATCTCTGCCATTGATTGTTGAAGTAGAGAGTCTGCCAGTAGGAAAAGCATCTTCTCCAGCAACA GCCCCAGTACACTTGACCTCCAGTGAGCCAGCCCCTTCCCCAGAGATTGAAGAAGGCCATGAAGCTGTAG AGGGAGATTTGCCTGGGATGCTCGAAGAAAAAAAAGTAGGAAATAGCTCATCCCATTTTCTACAGCCAGA TATCCGAGGCCCCTTGTTCTTATGTGAAGACTCAGAACTGGAGTCACCACTGTCTGAACTGAGCAAAGAA ACCATCCTGCTAATGACCCCAGGCAACTTCCTTTCTGACAGGATTCAAGATGCTCTGTGTGCCCTAGACG ACTCCGGGGCTCTGGAGCCTAAGGATGGCGAGGGATCTGAATGTATGGAAGGAGCAGAGGCCGAGGAGGC CCCAGGGACAGACACAGAGACAGGCATGCTGGTCTCCGTGCTTAATTGCCCAGAGATCCAGATTGACACA GCAGACAAGGAGGTGGAGCAAGGAGATGACACCTCTCTTACAGCTTTGCTGGAGGAACCAGAAAAACCCT GCCCCCTACGGCCCTCATGTTTAGACAAAGATCTCGCCAGTGGTGTGTGCTCCCTTGAACCTGCTATGCC CCCAGTGCCTCTTTCCTCCTCTCCACCTGGTCCTCTCAGCTCAGCCACCTTCAGCTTCGAGTCCCTGAGC AGTCCAGACGGCCCGGTTGTCATCCAGAACCTTCGAATCACTGGCACCATCACTGCCCGAGAGCACAGTG GGACTGGATTCCACCCATACACACTGTACACTGTGAAGTACGAGACTGTCCTTAATGGCGAGAACAGCAG CGGCCTACAGCAGCTGGCCTATCACACCGTGAACCGCCGCTACCGGGAGTTCTTGAATCTGCAGACCCGC CTGGAGGAGAAACCAGATCTACGAAAGTTTATCAAAAATGTGAAGGGTCCAAAAAAGCTCTTTCCAGATC TTCCGTTTGGAAACATGGATAGTGACAGAGTAGAAGCCAGGAAGAGCCTCCTGGAGTCATTCCTGAAGCA ACTCTGCGCCATTCCTGAGATTGGCAACAGTGAGGAGGTGCAGGAGTTCCTTGCTCTGAACACAGATGCT CGGATTGCCTTTGTCAAGAAACCATTCATGGTCTCTAGGATAGACAAGATGGTGGTGAGTGCTATCGTGG ACACCTTGAAGACAGCATTTCCTCGCTCTGAACCCCAGAGTCCCACAGAGGAGCTGAGTGAAGCAGAGAA TGAAAGCAAGCCCCAGACAGAAGGCAAGAAGGCTAGCAAGTCCAGACTGAGGTTTTCATCCAGTAAAATT GCCCCTGCACTGAGTATAGCCGAGGCACAGGACAAGATTCTGTACTGCCTCCAGGAAGGCAATTCGGAGT CAGAAGTCCTGTCCATGTCTGGGATGGAGTCTTTCATTGAAAAACAGACAAAGTTACTGAGAATCCAGCC AGCAGAAGTCCCGGATAAAGATCCCCAGCAAGTGCCCAAAGAATATGTGGATAGCGGTCTGCTGGACAAA GCTGTGGTAGCCCAAGAGCTCAACAAGAGTGGCCCGGGAACGGAGACAGAGTTAGCCGACACGGCCTTTG ATCTGATCCTCCTGCTGTTGATGGAGCAATGGAAGTGGCTGTGTACTGAAAGCATGCAGAAGTTCCTCCA CATTATTTTTGGCACACTAGTTCAGAGGTGGCTAGAAGTGCAGGTGGCTAATCTAACATGTCCCCAGCGC TGGGCACAGTACCTCCATCTTCTTCGGGAATCTATCTGGCCTGGTGGAGTGCTGCCCAAGTTTCCACGGC CTGGAAGGACGCAGGCACAGAAAGCAGCTACGGAGAAGCAGGCTTTGCAGAGCTTGATGGATCTCCTTCC AGATTTTTTGGTAGAAATCCTGGGAGTGAACAAGTGTCGGCTGAGCTGGAGTCTTGTCTTGGAGTCATTC CAGCAGCCCCTCATCAACAGACATTTGATTTACTGCCTTGGAGACATTATCCTGGAGTTGCTGGACCTCA GTGCCTCTGTTGAAGAGTGTGCCCCAGCTACCTCTGCCTCAGATTCCCCAGGAAGCCTCAAGAAGATGGC TGTCTCCACTTAGCTAAAACACCATCTCCAAAGGCTTGAAAAAGAGAGCTGTTCAGCTTCCAGAAACAGC TAAGATACCTGTGCCCTCTGGAGCTAAGCTAGCTTAGCTAGCCTCCATCTCAGGGGCTCAGTTCCCCTAC CAGGTCTCCCTTAGTAGCACATGACGGAGCTACATAGCCTATTTGCATGTGTACCTGTTTCCATAGTCTT TGGCATGTGGATTGCTGCGGAGAGGAGGTCTTGTTTCCTTGAGAACAGAAGCTGTGAAGCAAAGGCTATT TATCCCTTTGCCTTCTCACCATCACGGTTTGCCAACAGCATGGCCCTGCGCATGCGTGAACCTAATCCAC AAATGTGCAAGTGGCAGGTGACACAGGAGAAACAATGGAGCCAGATTTCCTGGGGGGAGAAGCAGTCTCC TGAGCTCTCTTTTCCTAGCTGGAAACCAAACGTTCATTCAGGATCACTCCCTTACCCTGCCCAGTTCCCA ACAATTCCAGAAGAAGAGGGAAGGAAAGTGTGTCTCCAGGGACTTGCTTTTTGGCTATTTTCTGACACAG TGGACTTCTAAAGGATGTCAAGAAGGCTGCTTCCTAGGGTGGCTATACTTTTCCTGTCCAGAGGCTTCAA AGCACACTGTCAAACTTCTGGTAAAGCCACTCCACCCTTCACACCCTTTCCTGCGAGGGATTAGACAGCA GATTTCCTTAACTTTCCTCCCAGCCCCTACCCAAAAGCAAATGCGTTTTGGATTTGTAACTTTCCTTCTA TCAACAGAATTGCATGGCAAGTTACGTATTTGGTCTCAGTATTTCCAAAGAGAAAGGAAAGTACTTGTTC CATGGCTGAGGGTGTACAAAGAATAGAAGTCAGGGGATGAGTGGGGATCCCTCCACAAGATTCTGGCAAG AATAATATAGCAAACTTGCGGATACAGATTTTACTTTCTGTTCCTTAAATATTGAATTAGTCCTTAGGAG GCCAGGAATAAAGGCAGAACAGTCTGTGTCCACTGGAAAGATGGAGCAACTGAGAGCAGCTGTTAGAAGA AAAGGGAGTTGGAGGGAAAGTCACAAGGTGAGTGCTGCTGCCCAGTGAGTGCACATGAGTAGCTGGCATC CCCAGGGTACCCATGAGAGACCATAGCCAACCCTCAGCTCAGGAGGTCTGTGTTGTGTAGCTCTAGCCTT GCTATACTCAACTACAGAACCCACAGGGATGGAGGTCATGGGGAAAGCCTGGTAAGAACTGGGAAGGCAT CAAGAGCCAGCATCAAAGTTGTCACAGACTCTGAAGTGTGTGATGAACACACAATTAAAGTTGTTCATAG AAAAAAAGGTTGTGAAATTGTTTTAGTCTCCTGTCCTGAGAGGCTCGTAACTGTACATTACACTCTGATG TGACTGGGAGGGTTCTGGCTTAAAAAGAAAAAACAGTGAATGAGATAAAGTTTTATGGCCTCTTCTGGCC TTGAAGCTTGACTTGATGGCTCCATAGTTTTTGAAGTATCCCCTTCCCTAGACCCTCAGAGGCAAAGATA ATTCAACATGTCCTCTGAGTGCCTGCTAGGGATATGGTTTCAAGGGGATGCCTTAGAACTGATCCTGTGG CTCCTAGGGTAAAGGCCACTTTATTCTGTATTGGCGGAATGAGCAACCCTGATTTCTGAACAGGCTTCTC TCCCAACACCCACCCCCTTCGCATGACCACAGCCACCTGTGTCCACTTGAATCTGCTACCAGTCCTGGTA CACATGTGCACAAGCACTGTTAACCCAACACACCACGAGTTCCTGTGGCAATGAAGTCTAAGGGATCTTT TCATGCCTGCAGCCCAGAGAACTTCCCTATGCTTCATTTTATATAAGAGGACACACTTTTACTCCACCTG CCTTCAAAAGATAAGCCATCCTCAAGAGGGAAATAATAAATATAACCAAGGATATATCAAAACCTCTCTG ACTTGGAAAAAGGTTAGTAGCAGGCTCCAACCTCAAGATCATGAGCATGTGGGAGAGCCACGGGTGTTGG GGTGATGCTCCAGGCTGGGAGTGGGAACGGAGGGAGAACTGAGCCACACTAGTCCACTTGATTTCTTCCC TGTTTGTTTGGCTTTTTAAGGACCCAGTTTGTTCATTTAATTGAGAATATTAGTACCTGAAGTAAGACCA ACACCCATTCTGTCTTGATTGCACATTTGTAAGAAGAGGAGAGATGGGTGGATACTGAGCTCTTTCTGGC AATTTCTAAATGCCATCCTTGCTGTCATTTATTAAAGTTCAAGATCGCTGTATATAATTATACAATTTTA TATAAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6405897 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6405897 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:14638 same embryo
	EMAGE:14641 same embryo
	EMAGE:14637 same embryo
	EMAGE:14640 same embryo
	EMAGE:14636 same embryo
	EurExpress:euxassay_005575 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source