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EMAGE:14649

Utp3 UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) ( MGI:1919230)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14649 EMAGE:14649 EMAGE:14649 EMAGE:14649 EMAGE:14649
"Pseudo-wholemount" of euxassay_005562. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005562_01 euxassay_005562_02 euxassay_005562_03 euxassay_005562_04
EMAGE:14649 EMAGE:14649 EMAGE:14649 EMAGE:14649 EMAGE:14649
euxassay_005562_05 euxassay_005562_06 euxassay_005562_07 euxassay_005562_08 euxassay_005562_09
EMAGE:14649 EMAGE:14649 EMAGE:14649 EMAGE:14649 EMAGE:14649
euxassay_005562_10 euxassay_005562_11 euxassay_005562_12 euxassay_005562_13 euxassay_005562_14
EMAGE:14649 EMAGE:14649 EMAGE:14649 EMAGE:14649 EMAGE:14649
euxassay_005562_15 euxassay_005562_16 euxassay_005562_17 euxassay_005562_18 euxassay_005562_19
EMAGE:14649 EMAGE:14649 EMAGE:14649 EMAGE:14649
euxassay_005562_20 euxassay_005562_21 euxassay_005562_22 euxassay_005562_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14649Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14649_wholemount_strong.wlz
14649_wholemount_moderate.wlz
14649_wholemount_weak.wlz
14649_wholemount_possible.wlz
14649_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14649_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5455
Entity Detected:Utp3, UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) ( MGI:1919230)
Sequence:sense strand is shown

>T5455
AGACTCTCTGCTCCGGTGGTCACCGACTTGGGTTCGCGGAGCGTGCTGGTGCTGAAAGCCTCCGCTTGCC
GGCATCATTCTGGGCGGAGGTCAGAAGTGGCGGAAATCGCGGCGTCGCTTGGGAACCCGGGACCGCTGGT
GAGCCATGGTGAAGAAATCACGGCGGCGTGGAGCGGCTCAGTGGGCCGCCGTGCGGGCCCAGGCAGGTCT
CACCGCCACGGACGAAAATGAGGACGACTTGGGGTTGCCGCCCTCTCCAGGGGACTCCAGCTACTACCAA
GACCAGGTAGATGAGTTCCATGAAGCGCGATCTCGGGCAGTCCTGGCCAAGGGCTGGAACGAAGTCGAGA
GTGGGGAGGAGGATGGCGATGAGGAGGAAGAGGTGCTACCTCTAGATATTGATGATGGAGATGACGAAGA
TGGAGAGAGTTCGGAGGAGGAGGAGGTTGGAGAGGATGATGACGGCGGAAGCTCCGTGCAGAGTGAGGCT
GAGGCCTCTGTGGACCCTAGCTTGTCCTGGGGTCAGAGAAAAAAGCTTTATTACGATACGGACTATGGTT
CCAAATCCCGAGGCCGTCAGAGTCAGCAAGAAGTAGAAGAGGAGGAAAGAGAAGAAGAGGAGGAGGCACA
GATAATTCAGCGGCGCTTGGCCCAAGCCCTGCAAGAGGATGATTTTGGAGTCGCTTGGGTGGAGGCCTTT
GCAAAGCCGGTGCCCCAGGTAGACGAAGCTGAGACAAGGGTTGTGAAGGATTTGGCTAAAGTCTCGGTAA
AAGAGAAGCTGAAAATGTTGAAGAAAGAATCACCAGAGCTCTTAGAGCTCATAGAAGACCTCCAAGCCAA
GTTGACAGAGGTGAAGGATGAGTTAGAACCCTTGTTACAGTTGGTGGAGAAAGGGGTCATTCCAACTGGA
AGAGGAAGCGAATACCTGAAGACTAAGTATAATCTCTACTTGAACTATTGCGCCAACATTAGCTTTTATT
TGATCTTAAAAGCCCGGAGAGTCCCTGCACATGGACATCCTGTTATAGAAAGGCTTGTTACCTACAGAAA
TCTGATCAACAAGCTGTCGGTTGTGGATCAGAAACTGTCCTCTGAAATCCGTCACCTCCTCACAGCCAAG
GATGGTGCTGTAAAGAAAGAAATGACTCCAAAAGCAAAATTAACCAAAACCAAGCCCAAGTCTGTAAAGC
AGGCTGCTGCTGTTGCCCTGACTGATGAGCCTGATTTTGATGGGGCTGCTCTCAAGTACTATAAGGAAAT
GGAAGACAGGCAAGAGTTGAAGAGAAAGAAGGAAGAAAACAGTGCTGAAGAACAGGCTCTCGAAGAACAA
AATGCAAAGAGAGCCATTACCTACCAGATTGCTAAAAATAGGGGACTTCCCCCCTGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5371012 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5371012 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14653 same embryo
 EMAGE:14651 same embryo
 EMAGE:14650 same embryo
 EMAGE:14648 same embryo
 EMAGE:14652 same embryo
 EurExpress:euxassay_005562 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS