Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:14659

Ssty2 spermiogenesis specific transcript on the Y 2 ( MGI:1917259)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14659
euxassay_005555_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14659Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14659_wholemount_strong.wlz
14659_wholemount_moderate.wlz
14659_wholemount_weak.wlz
14659_wholemount_possible.wlz
14659_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14659_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9887
Entity Detected:Ssty2, spermiogenesis specific transcript on the Y 2 ( MGI:1917259)
Sequence:sense strand is shown

>T9887
ACTGGCTGGAGGTTGCGCATCTATTCCACTTGGAGGCGCTAGAATCCATTCAAGGAGCTCAAATCTGTTT
AGCATAATCTTCTTCACCTGCTCAGAAGTTCTCGTAGAGAAGAGTCTTGGTCCAGCATTCACTCTCAACC
CATAACCATTGCCCATCAGGAATTCATATATATGACAGAGGCAACAGCATTGTGTCTGGTTTAAACGGGC
AAGATCTTCAGTCCCAGGCAATGAGCAAGTATGATATTTGAAGGGAATGGAAGCCACAAGACAGTGTGAT
CTACCACAACAGGTCTACAGCCAGGTAGAAGACAATACATCTGAAGAGTCTGAGCATGACATCACTCAAG
AAGAAGAGTAGGAGGAAGCCTTCTTCCCAGGCCCTGGGGAATATTGTTGGCTGCAGAATTTCTCACGGGT
GGAAGGAAGGTAATGAGCCTGTCACCCATTGGAAGGCCATCATTCTAGGTCAACTGCCAACAAACCCTTC
TCTTTATTTGGTGAAGTATGACGGAATTGACAGTGTCTACGGACAGGAGCTCCACAGCGATGAGAGGATT
TTAAATCTTAAGGTCTTGCCTCACAAAGTAGATTTTCCTCAGGTGAGGGAGGTCCACCTCGCAGGCACAC
TGGTTGGCAGAGAGGTACAACACAAATTTGAGGGGAAAGATGGCTCTGAGGACAACTGGAGTGGGATGGT
GCTAGCCCAGGTGCCATTCTTACAGGACTATTTTTACATTTCCTACAAGAAGGATCCGGTCCTCTACGTC
TATCAGCTCCTGGATGACTACAAGGAAGGTAACCTCCACATCATTCCAGAGACCCCTCTGGCTGAGGCGA
GATCAGGTGATGACAATGACTTCTTAATAGGTTCCTGGGTGCAGTACACCAGAGATGATGGATCCAAAAA
GTTCGGAAAGGTTGTTTACAAAGTTCTAGCCAATCCTACTGTGTACTTTATCAAATTTCTCGGTGACCTC
CATATCTATGTCTATACTCTGGTGTCAAATATCACTTAAATTGAAAAAAATCACAAAGTACAGAAATGTA
AACTTATAGGATTGAAAAAAAAATGTTTGTTTTCCTGTGTTGGGTACCTATGGGTCTTTGACAACCTCAG
TATCTTTGTCAATAAAATTTGTTTTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6774426 using vector (pDNR-LIB) specific primers. Forward Primer - name:M13 forward (-21), sequence:TGTAAAACGACGGCCAGT; Reverse Primer - name:T3-pDNR-LIB rv, sequence:CAAATTAACCCTCACTAAAGGGTGTTCACTTACCTACTGGGC. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6774426 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14656 same embryo
 EMAGE:14658 same embryo
 EMAGE:14655 same embryo
 EMAGE:14657 same embryo
 EMAGE:14654 same embryo
 EurExpress:euxassay_005555 same experiment
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS