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EMAGE:17107

Ccdc59 coiled-coil domain containing 59 ( MGI:1289302)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17107 EMAGE:17107 EMAGE:17107 EMAGE:17107 EMAGE:17107
"Pseudo-wholemount" of euxassay_001492. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_001492_01 euxassay_001492_02 euxassay_001492_03 euxassay_001492_04
EMAGE:17107 EMAGE:17107 EMAGE:17107 EMAGE:17107 EMAGE:17107
euxassay_001492_05 euxassay_001492_06 euxassay_001492_07 euxassay_001492_08 euxassay_001492_09
EMAGE:17107 EMAGE:17107 EMAGE:17107 EMAGE:17107 EMAGE:17107
euxassay_001492_10 euxassay_001492_11 euxassay_001492_12 euxassay_001492_13 euxassay_001492_14
EMAGE:17107 EMAGE:17107 EMAGE:17107 EMAGE:17107 EMAGE:17107
euxassay_001492_15 euxassay_001492_16 euxassay_001492_17 euxassay_001492_18 euxassay_001492_19
EMAGE:17107
euxassay_001492_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17107Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17107_wholemount_strong.wlz
17107_wholemount_moderate.wlz
17107_wholemount_weak.wlz
17107_wholemount_possible.wlz
17107_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17107_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4470
Entity Detected:Ccdc59, coiled-coil domain containing 59 ( MGI:1289302)
Sequence:sense strand is shown

>T4470
GGAAAAAGATGGCGCCTTCGCGGCCGTCTTCCAAGTGGCGGACCGGAGGGTTTGCGGCGCGTGGGGAAGG
GATCTCTCAGGTCAGATTCGGAAACCAGAATGGGAAGCGCAGGACTTGGCGGCCGAACCCCCAGCAAGCC
TTCCGGGGGAGCGTGCGCAAGGGACAAGGTTTTGCATTTCGGAGAAAACTGAAGATCCAGCAAAATTACA
AGAAATTGCTGTGGAAGGTGAAGGAGGCACCAGCGTCACAGGAGTCCCAGTTCACAGATCGTTACCCAGA
GCACCTGAAACACCTCTATCTGGCCGAAGAGGAAAGACTCAGTAAACAGCAAAGAAAGGCTGGCCTGGCT
TTGTCAGAACAGGTTGACCGGCCTTTGCCTGAAGAGGAGGGCAGCACTGAGCAGACTTCCTCTGAAGAAC
CGCCAGGTGGTCACCAGCCACAGCCAGAAGAGCTGAACACAGGAAGTTCTGTGACTTTTCCAAAGAATAA
GAAAAAGAAAACTTCAAACCAGAAGGCACAAGAAGAGTATGAACGAGTACAAGCGAAGCGTGCTGCTAAG
AAATTTGAATTTGAAATGAGAAAGCAAGAGAGAGAAGAGGCTCAAAGGCTCTACAAAAAGAAAAAAATGG
AAGCTTTCAAAATACTGAGCAAAAAGACTAAAAAGGGCCAGCCTAACCTGAATTTACAGATGGAGTATCT
TCTGCAGAAAATACAAGAAAACAGTTAAAGCGGACACTTTGTCTCTAAGGACTGAATCCTGACTGACTAT
CGCATCCTTTTGTATGTGTATGGGAACCTCCTAATGATGAACTCAATTTGTTGGCATCAAGTGGATTGTT
AAATTATTTTTGGTTTTTGTGAAAGAAAATTTTGTATATAGATTCTCCACCTCCCCCCCCCCCCCCAAAA
AAAAGACTTTATCCTGAAGATCTTTAAAAACTTCAGTGGAATTTATATGAAATATACTGCTTTGAAATAG
GTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4948072 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4948072 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17106 same embryo
 EMAGE:17111 same embryo
 EMAGE:17108 same embryo
 EMAGE:17109 same embryo
 EMAGE:17110 same embryo
 EurExpress:euxassay_001492 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS