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EMAGE:17283

D230025D16Rik RIKEN cDNA D230025D16 gene ( MGI:2443049)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17283
euxassay_003673_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17283Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17283_wholemount_strong.wlz
17283_wholemount_moderate.wlz
17283_wholemount_weak.wlz
17283_wholemount_possible.wlz
17283_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17283_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5698
Entity Detected:D230025D16Rik, RIKEN cDNA D230025D16 gene ( MGI:2443049)
Sequence:sense strand is shown

>T5698
GGAGAGCCGGACGTCCGCGGGCTGGCGAGAGCGACCAGTCAGCAGCTGCGTGCTCTCCTCAGGCCGGGTC
CTGTCTGCGCTGCCGCAGGGAGGCCGCCCGGCCCAGCGAACCGACCCAATGCTGGACCTGGAGGTGGTGC
CTGAACGCTCTCTGGGGAACGAGCAATGGGAATTCACGCTGGGAATGCCTCTGGCGCAGGCGGTCGCCAT
TCTTCAGAAGCACTGTCGCATCATCAGAAACGTCCAGGTTCTCTACAGTGAGCAGTCTCCTCTAAGCCAT
GACCTCATCCTTAACCTGACTCAGGACGGGATCACACTACTGTTTGATGCTTTCAACCAGAGACTCAAGG
TGATTGAAGTTTGTGAGTTGACAAAAGTAAAGTTAAAGTATTGTGGAGTGCATTTTAACTCTCAGGCCAT
CGCTCCTACCATTGAGCAAATTGACCAGTCTTTTGGCGCAACCCATCCTGGAGTGTACAACTCTACTGAG
CAGCTCTTCCACCTCAACTTCCGAGGACTGTCTTTCTCTTTTCAGTTAGACTCGTGGACGGAGGCTCCCA
AGTATGAGCCCAATTTTGCCCATGGTCTAGCTTCTCTTCAGATACCCCATGGAGCAACTGTAAAACGAAT
GTACATCTATAGTGGGAACAGCCTCCAGGATACCAAGGCTCCTGTGATGCCCTTGAGCTGTTTCCTGGGG
AATGTATATGCTGAAAGTGTAGATGTTCTTCGAGATGGAACTGGACCCTCAGGGTTGCGACTTCGCTTGC
TCGCTGCAGGTTGTGGACCTGGAGTGTTAGCAGATGCCAAAATGAGAGTATTTGAGCGTGCGGTGTATTT
TGGTGATTCTTGCCAAGATGTTCTTAGCATGCTTGGCTCTCCACACAAAGTCTTCTATAAATCTGAAGAC
AAGATGAAAATTCACTCTCCTTCCCCTCATAAACAAGTTCCGTCCAAGTGCAACGACTACTTTTTTAACT
ATTTTACTCTCGGAGTGGACATCCTGTTTGATGCAAATACACACAAAGTGAAGAAGTTTGTCCTGCATAC
CAATTACCCTGGGCATTATAATTTTAACATTTACCACCGCTGTGAGTTCAAGATCCCACTGGCCATAAAG
AAAGAAAATGCAGGTGGTCAGACTGAAATATGCACAACCTACAGCAAGTGGGACAGCATCCAGGACCTTC
TGGGCCATCCTGTGGAGAAGCCTGTTGTCTTGCACAGGTCCTCATCCCCAAATAACACCAATCCGTTTGG
CTCCACATTCTGCTTTGGTCTTCAGCGGATGATCTTTGAGGTCATGCAGAACAACCACATTGCCTCAGTG
ACCCTGTATGGCCCCCCCAGGCCTGGTGCCCACCTGAGAACAGCAGAGCTGCCCTAAGGACATCACTGTT
TTCCCTGTCCATGGAACTGTGCGTCACATCCAGCTCAGTGGGTCTCTGTGCCACCCTGTGTGTTTGCTTG
GACACCTTGGCAGTGTTGAAGGGCCCTGGGACTCAGAAGGGTTTGGAAGTAGGATTTGGGCTGAGTCCTC
TGCCGTGGGACGGAGGACCCAGATACTCTGTCCTAAGCCTGCTGTTGCCAGGAGAGAACACAGTGTGCAA
AAAGAAGCACAAACTTAGAGCCATGATGAGGGCTCTCATAACTAACATGTAATAAAGGACACGTCAGCCC
CTGCCCTGCTCACATAGGGAAGACAGGACTCTTTCTCTAGCTAAGAAAATATTCCCAGGATGAGAACAGG
CTCCTGCTTTTGGCCGGACATTGATTGCCACGTGGCCCCTAAGGTGAGCAGAGCAGGTAGCGTGTCGGTA
GTACTTGGTTGCAATATTTGCACTCCATCCACTTTAGTGACTTGATGAGCTGGCTGTGGCTGGTGTGGCC
CACTGCCCTTCCCTGCTTCTCCTGTGAGTGCTCCTTGCCGTGCCCAGGTGGCACCTAAGTGGATGAAATC
GTTTCCTACCAGGTATGTACCAGGCCTGGTTCCCACTGCTGCTCTGGGAGCCAGCCTTTAAGGTCACCTG
TGTCTCTTGGTCCAACCTGGCTGACAGGGCTGCATGTCTCCATCTTGTTTGCCTCTTTTATTTAATGCCA
AAGTGTTAGCCAAAGACACCTTCCTCCTTTTGTTACATTACAGCATTCTGTTATGCACTGTGGGCCAGCT
CCTTGCCCTAGTTCTGGGCACTGGCCTGGCCTGGCCTGGCCTGGCTACTTGGTTTGAGGCCTAGAGGCTC
AAGGAACACTAGGCTGCTTGGTTTCTTACATGGGTCTTGCTAATGGGAAGTAGCATATATGTGCTTTAAA
ATAGTAATCCTTTTGAAAAGAATTGAGAAGAGAAACATATAATTTTATCCCATTTTTAATATTTTGGTCT
AGCAACTTGTGATACATAGATGACAATTTTGTGAGTTTTTCAAATGTGTGTACAGATTTTTGTAAATAAT
GACTTTTGTAATTAACTCATGTACAGCCTCATCTTGTATAGTTCATGATGAATGTGCAGGGGACCTGCCC
CAGCTGTCTGTATGGTTCCTGGGCCTACAGCCAGGCCTGTGTGGCACTCCCATGACTGATTTGACAGGTG
TCTTCCCATTTGGACCTTCGTCTGGCCAGAGACCCTGCACATCCCACTGTCAGGGTAGCCAGGACTCTTC
CCATCCTCGTGAACAGAGGAGACTTCCTCGTCCCCCTTCCAATAAAGCACCTATGCCCACAGTGACAGCG
TGCCATGTGCTGCCACTGGGCTGTTTGTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:2646515 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:2646515 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17288 same embryo
 EMAGE:17286 same embryo
 EMAGE:17285 same embryo
 EMAGE:17284 same embryo
 EMAGE:17287 same embryo
 EurExpress:euxassay_003673 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS