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EMAGE:17386

Bpifb6 BPI fold containing family B, member 6 ( MGI:2684965)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17386
euxassay_003810_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17386Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17386_wholemount_strong.wlz
17386_wholemount_moderate.wlz
17386_wholemount_weak.wlz
17386_wholemount_possible.wlz
17386_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17386_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7763
Entity Detected:Bpifb6, BPI fold containing family B, member 6 ( MGI:2684965)
Sequence:sense strand is shown

>T7763
GTCAGCTGCAGGCCTTCCCCAAGCTTGGCAAGGTAGGCACAGGCCAGCTGTGTGGCCCAGCCCCTCCTTG
ATTCCTTTCAGTCAAAGCTCATACCAGAACTACATACCTGGCCCCAGCTGGGGGAACTTCAGGAGTTGGT
GGAGGCATGCTGTGTAGCCTGAGCCTGGTCCTCTGCGGCCTGCTGGCTGGCACTCGAGCTGACCCTGGGG
GTCTTCTGAGGTTGGGCATGGACATTATGAACCATGAGGTCCAGAGTGCCATGGAGGAGAGCCACATCCT
GGAGAAGATGGCAGCTGAGGCTAGCAATCCGCAGCCAGGGGGAAAGGCCATTAAAGGCCTCAGCAATATG
AAGGTAAAGGACGTCCTGGAGCCTGTTATCACATTGAACTTTGTACCTGGAGTGGGCATCTCCCAGTGTG
TGTCCACAGGCATGACCATCACTGGCAAGAGTTTCACAGGAGGGAACATGGAAATCAACGTGGTCCTCAA
CATCACAGCTACTGATCGGCTTCTGCAAGATGAGGAGGCAGGCACCCCTGTGTTCAGGAGTGAGGGCTGT
GAGGTCATCCTGGTCAGCGTGAAAACCAACCTGCCTAACAACAAAGCCATCAACAAGTTTGTGGACAGTA
CCCTGCGCAAAGTCCTCCCTGGCCTGATGTGTCCAGCCATTGATGCTGTCCTGGAGTATGTGAACAAGAA
ATGGGCCAAGTTGACTGACCCCATGCCCGTGGACAAGATGGGCACTGTCAAATATGCCCTGACATCCCCA
CCAGCCACTACAGCTAGCCACATCCAGGTGGACTTTAGTCCTGTGGTGCAGCTCCAGGAAGGCCAGCTTA
TCCAGCTTGCCACTGATGGGTCACTCCCGGAGTTCCCCGAGGGCTCAGCCAAGGACTCACAACTGCTGCT
CTCAGCCACCTTCCTCACAGCTGAGCTGGCCCTTCTGCAGAAGTCCTTGGAAGTGAAACTCAAGGACAAG
AGGGTTGGTAAGCTTCCACAAAACACTAGGACACTGGCTGGCTTCATCCCGCAGGTGGCCAAGACATACC
ACAAACCAAAGCCTTTGCTGATCAAGGTCAAGATAAACAAACCCCCCAAGGTTACCATGAAGGCTGGAAA
GAGCCTGATGCACCTCCACGGTAGCTTGGAGATGTTCGCAGCGCGTAGACATGGCAAGCACCCGAAGTCA
CTCTTCCGTCTGGAGACTCACATTGGACTGGAAATCCACTACTCCGTGCAGGATAACCGGCTGCAGATGG
TCACCTCTATGGACAGTTTATTGAGCCTGGCCCGGGAATTTTTTTCAGTTGGCGATTTCCACGAGGCGGA
GTTAACTGGCTTCATCACTGATTATCTCCAGAAGGCCTACATCCCTGTGGTGAACGATGTACTCCATGTT
GGGCTTCCACTCCCAGACCTTCTGGCTATCAATTATAACCTGGCTGAGCTGGACATAGTAGAGGATGCCC
TGGTGCTGGGCTTGAAGACAGAATGACCATGCAAGACGCTGCCAACTGCCTTCATCCGCCGTTGTTCTGA
ACCAGCAGAGGAGTCCAGATGTGAGCCAGATGGGCCTGTCCCTGCCACCGATGGTTACCTCCTGTGACCA
GGAGAAAGTACGAGGCCTGGTAGGCCTCAGCAATAAACAGGAGGAAGACCCTTAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6312228 using vector (pCMV-SPORT6.1) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6312228 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17385 same embryo
 EMAGE:17389 same embryo
 EMAGE:17388 same embryo
 EMAGE:17384 same embryo
 EMAGE:17387 same embryo
 EurExpress:euxassay_003810 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS