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EMAGE:17429

1700065D16Rik RIKEN cDNA 1700065D16 gene ( MGI:1920660)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17429
euxassay_003861_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17429Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17429_wholemount_strong.wlz
17429_wholemount_moderate.wlz
17429_wholemount_weak.wlz
17429_wholemount_possible.wlz
17429_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17429_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7817
Entity Detected:1700065D16Rik, RIKEN cDNA 1700065D16 gene ( MGI:1920660)
Sequence:sense strand is shown

>T7817
GGGGCACCTCTGCCACCCAAATTCTGGGATTGAAGGCGGCGAGCCTCAAAGAGGCAACTGCAGATGAACA
CCAACGCGTGTTTTAGTTTGGGGGACGCTGTGCACGTTGGACTCCGTGGACCCGTGGCCAGTCCCGGGGA
CTTCCGACTAGAGTAGCGGGCTGGCCGACGCTCGGCCTCTCTCGGAGGAGAAACCGCCGCGCTTCCCTCA
GAAGCGGGGCCGTGATTCCCAAACAAAACCTCAGCCAATGGATTCCGTCAACAACGACCAAAGGACCAGG
ACCCGGGGGAAGTTTTCGGGAAGCAAACGAGTGTGGTAAGATGGCCAGAAGAGACCCTTCTCGAGGCCAA
GCGGGAAGCAGCTCGCGTGGACTGGCTCCCCGCGAGCCGAGCCGCGGCTGCCACGGTCACCCCGGCACGT
GGGTCGCCACGGCGCTCCGGCCAACTGCCACTGTGAGGGAGGGAACGGCGGCCACAGGCCGCGGCGCGGG
CCGAGGAGACCCGGCGACTCGAAGCTGGCGACGACGCGCGGCCCTACCTGGCCAACTCCCGCAGGGCGGG
GATCATGGACGCCAGCTCCAGCCCGTGGTCGCCCATGGTGACACCGAGCGGCTCTCAAAACAGCCGCCGC
CGGCGCCGGGCTTCTCCACAGCCGCCTCCGGTGGAGAGGGCGGAGCGTCGACGGAGCCCCGCGAGGTCCA
AAATTCTCCTCCCGGAAGCCGCTCTCGGTTGCGGTTGGAACCCTGGGGAAATCCCAGAGGCGACAGGGGC
GGAGCCGACAGCGGACGTGCCCGCCCACTTTCCCTCCCAGGCGAGTGCGTGACCTACTCCACGGGTATTT
TTTGCTCAAACCTGGATGCTCAGGGAAGCCGTAAGCTAGGATCTGGGTCGGAGAGGGACCTGACGACCCA
ACAAAGTTAGATATTTCACTATGTTCGAATGGCATATTTAACTAGGTAAGGCCATGCAGTAATCCTTACA
TTTGCTGTTTAGGACACAAGGGTAATTATTGATACAACCTCCAAAAATAAAATTAAAAAGTGGTGGAATG
GCAGCCAGATGCGCTCTGACTGCAAAGCTGTACTTTGAACACCCATCCCTTTGCCCCGTTTCCTTCAGTG
ATGCCCTGTGACGAGGAACTTTAAGCTGAAGCAAACCTTTTCCTTCCCAGGTCACTTTCCATCATTGTGT
TCCATCACAGCAATAGAAACCTAACATAGGACAGGCAACTATGAAAAATAGTGTATCTGCTAAAAAGCAA
GAAAAGCTAGCTATTTTGAAATCATGTTGAGAAAGATGACAATAATGACAGAGCTGAGGGCACAGTCCAG
TGGAAGAGCACTAACCTAGCTCGTGAGGCTCGGGCACAGAGGACCTAGAGTACTAAACAAACTACAGTTA
AACGATTTTAAAAAAGAAGGCATAGTTGCACATGCCTACAATCCCCTTACTTTGGGTATAGAGGCAGAAG
GATCAAGAGTTCAAAGCCATCCTTAGCTCTATAATGAGCTCAAGGGCAGTCTGGGATACAGGGGAACCCT
GTCTCAAAAAACAAAACAAAACCAAAAGCCACTACCACCACCACCAACAACAACAACAACCCAGTATGTA
ATTCATCACTGAGTAGCACTGCAGTTCTGAAGTGCAGGACCCCAAACAGCAGAGCTCTGGCAAATCTAAT
CCAAAAAGCAATTTTTGAAACAATTATTTGTTTTTCACTTTACATTCCAATACCACCCCCTCTCCTCCCA
GTGCCGTTGGTGGGCCACCATGGGCAGTCCACATATGTCCTAGGCTATCTGTGAATATGATCCAACACAA
CTGAGGGACAGCACCATCACCCAGTGTCGGTAAGTGGTAGGGAGGTACTGATAGCTCTCCACAGAGTGAC
AATAAGCTGGCCACAGCACTACATGGCTATAATTCTAGCACTTTAGAGGCGGAGGCAGCATGGTAACCAG
CTTAAGCCGCCTTAGGTTACATGGTGAGGCACAGTCTGAAACAATAGCAAGAGCTAGTCAAAGCTACCCT
TGAGTTTGGAGGGGGGTGCAAATCAGAATGAAAGGAAGCTGGCAGCCATTTATCTGGACAGCCTTAGTGA
TACACCAATAAATGAGAGGCAGATGCCAAGGCCAGTGTCGGTCCTCCCTCTGAGGACTCTCTCTCTCTGC
CAAACTCTGCAGAAGAATTTTTCGTAAGGCTGATTCTATTTTCATCTCCCATTCAGTCCTAACCCAGTAT
TTATTATACTCTGCCCTTGTGTCCCTCCCCCTCCCTGCCCTAATTCTCCCCAGAATCACCAACAGTTTCT
CTTTTTCTCCTGTTGCTGCTGTTGTTGTTGCTTATTGAGATTGGGTCCCCCATAGCCCAGGCTGGCCTTG
AGCTCACTATGTAGCTGAGGATGACCTTGAACTGCTGATCTTCATCCCACCTTCTGGGTACTGGGATTAC
AGGCAGGTGCCTCTATATTTAGTTTACATAGAGCTAGAGCTAGAGCTCAGACTCATGGTGTGGTGGTTTG
AAGGAGAATGACCCCCAGAGGCTCATATATTTGAACACTTGGCATCCCCAGTTGGTGGAACTGTTTAGGA
AGGATTGCTGGAGGAGGAGTGTCACTAGGAATGGGGGCAGGTGGACTTTTAGATTTCAAAAGCCAATGCC
ATTTCCAATTACTTCTTTCTCTCTCCCTCTTCCTCTTCCTTCTCTTCCCTCCCCGTTCTCCCTGTCTCCC
CATTCACTCGTCTCTCTTCCCTCTGTCCAGTGCTTGTGGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6332684 using vector (pCMV-SPORT6.1) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6332684 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17428 same embryo
 EMAGE:17433 same embryo
 EMAGE:17432 same embryo
 EMAGE:17431 same embryo
 EMAGE:17430 same embryo
 EurExpress:euxassay_003861 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS