EMAGE mouse gene expression spatial database

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EMAGE:19340

Cnot3 CCR4-NOT transcription complex, subunit 3 ( MGI:2385261)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_002102. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_002102_01	euxassay_002102_02	euxassay_002102_03	euxassay_002102_04

euxassay_002102_05	euxassay_002102_06	euxassay_002102_07	euxassay_002102_08	euxassay_002102_09

euxassay_002102_10	euxassay_002102_11	euxassay_002102_12	euxassay_002102_13	euxassay_002102_14

euxassay_002102_15	euxassay_002102_16	euxassay_002102_17

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

19340_wholemount_strong.wlz

19340_wholemount_moderate.wlz

19340_wholemount_weak.wlz

19340_wholemount_possible.wlz

19340_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:19340_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T5494
Entity Detected:	Cnot3, CCR4-NOT transcription complex, subunit 3 ( MGI:2385261)
Sequence:	sense strand is shown >T5494 CCACGCGTCCGGATCCCTGAATCCCCTACTCGGTCGTCTAGAACAATCCCGGGCCCACTTCCTCTATCAA CAACCCAACCCTACTTCCGGCTTTCGCGCCCTCTTATCGCGATAGCGCCCGGGCTCGGGGCGCGAGGAAA GAGGAAAAAAAAAAAAAAAAAAAGGCGGCGGGCGGGCGCTCGCCTCTCTCTCCCCCCTCCTCGCCTGTCG CGATACGCTCCGCAGCGGCGGCGCCAGCTCCTGCGCGGCCATTTTCAAGAGAGTATGAAGAGAGTGCGTC TGTAGGGCAGGGAAGATGGCGGACAAGCGCAAACTCCAAGGTGAGATTGATCGCTGCCTCAAGAAGGTGT CCGAAGGGGTGGAGCAGTTTGAAGATATTTGGCAAAAGCTCCACAATGCAGCCAACGCGAACCAGAAAGA AAAGTATGAGGCTGACCTAAAGAAGGAGATTAAGAAGCTACAACGGCTGAGGGACCAGATCAAGACATGG GTAGCATCAAATGAGATCAAGGACAAAAGGCAGCTTATTGAAAACCGCAAGCTCATTGAGACGCAAATGG AACGGTTCAAAGTTGTGGAACGAGAGACCAAAACCAAAGCGTATAGCAAGGAGGGTCTGGGTCTGGCTCA GAAGGTGGATCCTGCCCAGAAGGAGAAGGAAGAAGTTGGCCAGTGGCTCACGAACACCATTGACACCTTA AATATGCAGGTGGACCAGTTTGAGAGTGAAGTGGAGTCACTGTCGGTACAGACACGCAAGAAGAAAGGCG ACAAGGATAAGCAGGACCGGATTGAGGGCTTGAAGCGGCATATCGAGAAGCACCGCTACCATGTTCGTAT GCTGGAGACCATCCTGCGAATGCTGGACAATGACTCCATCCTGGTTGATGCCATCCGCAAGATCAAGGAT GATGTGGAGTACTACGTTGACTCATCCCAGGACCCCGACTTTGAAGAGAACGAATTCCTCTATGACGACC TGGACCTCGAGGACATTCCACAGGCGCTGGTCGCCACCTCCCCCCCCAGCCACAGCCACATGGAGGACGA GATCTTCAACCAGTCTAGCAGTACACCCACCTCAACAACCTCCAGCTCTCCCATCCCACCCAGCCCAGCA AACTGCACTACGGAAAACTCTGAAGATGATAAGAAGAGAGGCCGATCTACAGATAGTGAAGTCAGCCAGT CTCCAGCCAAAAATGGCTCCAAGCCTGTCCACAGCAACCAGCACCCCCAGTCCCCAGCTGTGCCGCCCAC CTACCCCTCTGGCCCCCCACCTACCACTTCTGCCTTGAGCTCCACCCCTGGCAACAATGGGGCCTCTACC CCAGCAGCACCTACAAGTGCCCTGGGCCCTAAGGCCAGTCCAGCTCCCAGCCACAACTCGGGTACTCCTG CACCCTATGCCCAGGCTGTGGCCCCACCTAATGCCAGCGGGCCCAGCAATGCCCAGCCACGGCCCCCCAG TGCCCAGCCAAGCGGGGGAAGTGGTGGTGGCAGCGGAGGGAGCAGCAGCAATAGTAACAGTGGCACAGGC GGAGGGGCTGGCAAGCAGAACGGTGCCACAAGCTATAGTTCGGTTGTGGCAGACAGCCCTGCAGAGGTGA CCCTGAGTAGCAGTGGGGGCAGCAGTGCCAGCAGCCAAGCCCTTGGGCCCACTTCGGGCCCTCACAACCC AGCTCCCAGCACCTCAAAGGAATCCAGTACGGCAGCCCCATCAGGGGCTGGGAATGTGGCTTCAGGCTCA GGGAATAACTCGGGGGGACCCAGCCTCTTGGTGCCACTGCCTGTAAATCCCCCCAGTTCTCCAACGCCCA GCTTCAGTGAAGCCAAGGCAGCTGGTACCCTGCTTAATGGTCCTCCACAGTTCAGCACCACCCCAGAAAT CAAGGCCCCTGAACCACTCAGCTCTCTGAAATCCATGGCAGAACGGGCAGCTATCAGCTCTGGTATTGAG GACCCTGTGCCAACGTTACACCTAACTGATCGAGACATCATCCTGAGCAGCACATCAGCACCACCCACCT CATCCCAGCCACCCCTGCAGCTGTCAGAGGTGAACATACCATTGTCACTGGGTGTCTGTCCACTGGGGCC AGTTTCCCTCACCAAGGAGCAGCTATACCAACAGGCCATGGAAGAGGCCGCCTGGCACCACATGCCCCAC CCCTCTGACTCCGAGCGCATTCGGCAGTACCTCCCCCGGAACCCTTGCCCGACACCCCCCTACCACCACC AGATGCCACCCCCACACTCGGACACTGTGGAGTTCTACCAGCGCCTGTCAACTGAGACGCTCTTCTTCAT CTTCTACTATCTGGAGGGAACCAAGGCACAGTACTTGGCAGCCAAGGCCCTAAAGAAGCAGTCCTGGCGA TTCCACACCAAGTATATGATGTGGTTCCAGAGGCACGAGGAGCCTAAGACCATCACAGATGAGTTTGAGC AGGGCACCTACATCTACTTTGACTACGAGAAGTGGGGCCAGCGGAAGAAGGAAGGCTTCACCTTTGAGTA CCGCTACCTGGAGGACCGGGACCTCCAGTGACACCGGCCCCCCTCTACCCTCTCCCTCCCTCGCATGCTG ATCCCCCTGCCCAGGTGAGGGCCCTGCCCTGGAAGACTGGGGGAGGCCCAAGGCCATGGGACACCCTCCC CCCCAGGAAGCAGGGAAGGGATAGGGAGGTTTTCTCTTCCTCTCTGCCCTACCCTGGGGGCCTGGGGGCA AGGGCTGCCCCCTCCTCCCCTCCCCAGTGAGGGACATTTTTTGGTAAACCTATTTTCATTTTGGAAAATA TTTATGAATAAATAGTTTTATATGAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:5400871 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5400871 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:19337 same embryo
	EMAGE:19339 same embryo
	EMAGE:19338 same embryo
	EMAGE:19341 same embryo
	EurExpress:euxassay_002102 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source