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EMAGE:19380

Rai12 retinoic acid induced 12 ( MGI:1859017)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19380 EMAGE:19380 EMAGE:19380 EMAGE:19380 EMAGE:19380
"Pseudo-wholemount" of euxassay_002201. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_002201_01 euxassay_002201_02 euxassay_002201_03 euxassay_002201_04
EMAGE:19380 EMAGE:19380 EMAGE:19380 EMAGE:19380 EMAGE:19380
euxassay_002201_05 euxassay_002201_06 euxassay_002201_07 euxassay_002201_08 euxassay_002201_09
EMAGE:19380 EMAGE:19380 EMAGE:19380 EMAGE:19380 EMAGE:19380
euxassay_002201_10 euxassay_002201_11 euxassay_002201_12 euxassay_002201_13 euxassay_002201_14
EMAGE:19380 EMAGE:19380 EMAGE:19380 EMAGE:19380 EMAGE:19380
euxassay_002201_15 euxassay_002201_16 euxassay_002201_17 euxassay_002201_18 euxassay_002201_19
EMAGE:19380
euxassay_002201_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19380Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19380_wholemount_strong.wlz
19380_wholemount_moderate.wlz
19380_wholemount_weak.wlz
19380_wholemount_possible.wlz
19380_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19380_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6046
Entity Detected:Rai12, retinoic acid induced 12 ( MGI:1859017)
Sequence:sense strand is shown

>T6046
GTCTCTAGGACTGTGTACAGAGACTCTGGAGCGGCCCCTCCGTGTAAGCCCCCTGAGAATACGGAGCATA
AAAAAACCAGGCTCCTCTTTCCGGACTTTGCGGTCCTTTAAGGTTGGAAGCAATCGTAAGTGCCCCGCCT
CCTCGGTGGTGACGACATCAGAAGGCGTCCTGAGGCGTCAGAGATGCTGGACTCGTTGTTGGCCATCGGT
GGTTTGGTGCTTTTGCGAGATTCCGTGGAGTGGGAAGGGCGTAGTCTCCTGAAGGCTCTTATCAAGAAAT
CTGCACTTCGTGGGGAGCAGGTCCACGTTCTGGGCTGTGAAGTGAGCGAAGAAGAGTTTCGCGAAGGTTT
CGACTCTGATGTCAACAGCCGCCTGGTTTACCATGACCTCTTCAGAGACCCTCTTAACTGGTCAAAGCCT
GGAGAAGCTGTCCCTGAAGGTCCTCTAAAAGCCTTGAGGTCCATGTGCAAAAGGACAGACCATGGCTCAG
TCACCATTGCCCTTGACTCTCTCAGCTGGCTGCTGTGTCACATTCCCTGTGTTACACTCTGTCAAGCCCT
ACATGCTCTGAGCCAGCAAAATGGAGACCCAGGTGATAACTCCCTAGTAGAGCAGGTGCGTGTCCTGGGC
CTCCTACATGAAGAGCTTCATGGCCCAGGCTCCATGGGAGCACTGAACACCCTTGCTCACACAGAGGTGA
CTCTGAGTGGTAAAGTGGACCAGACCTCAGCCTCCATCCTCTGTCGAAGGCCCCAACAACGTGCAACTTA
CCAGACTTGGTGGTTCTCCGTTCTTCCTGACTTCAGCCTGACTCTCCATGAAGGGCTTCCCCTCCGTTCT
GAGCTACACCCGGATCATCACACAACCCAGGTGGATCCCACTGCTCATTTGACCTTTAACCTTCACTTAT
CCAAGAAAGAAAGAGAAGCCAGAGACAGCCTCACTCTGCCTTTCCAGTTCAGCTCTGAAAAACAGAAAGC
TCTGCTGCATCCGGTACCCAGCCGGACCACTGGCCACATCTTCTATGAGCCAGATGCTTTTGATGATGTG
GACCCAGAAGACCCAGATGATGACCTAGATATTTGACAGACAAATGGCAGAGGAAGGCTGTGGGCTCAGA
ACCACCCTGCTGTTGGCAGACTCTACCTTGTCCCTTGTCCTTTGTTACTTTGTCTGCAGAAGCTGTGTCG
TGAGCCAAGGAGCAGCATCAAGCTAGGATGAGTGTGATGAGGGCATAGTGTGTGCCCATTTCTAATAAAA
TATATATGTGTGTGTGTGTCAATCAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3489878 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3489878 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19381 same embryo
 EMAGE:19379 same embryo
 EMAGE:19378 same embryo
 EMAGE:19382 same embryo
 EMAGE:19377 same embryo
 EurExpress:euxassay_002201 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS