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EMAGE:29425

Trafd1 ( MGI:1923551)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:29425
euxassay_003755_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6967
Entity Detected:Trafd1, ( MGI:1923551)
Sequence:sense strand is shown

>T6967
GGGCGGCGGAGGCGGCGGTGGCGGTGCTGTTCCCGCTGGGCTCGGAGTTTTCAGGAAGAGCTGAGATGGC
CGAGTTTCGAGATGACCAGGCTTCTAGGCTGTGTGACAACTGCAAGAAGGAAATTCCTGTATTTAATTTT
ACCATCCATGAAATCCACTGTCAAAGGAACATTGGTGTGTGCCCTGTCTGCAAGGAACCGTTCCCCAAAT
CTGACATGGACATTCACATGGCTGCAGAGCACTGTCAGGTGACCTGTAAATGCAACAAGAAGTTGGAGAA
GAGGCAGTTAAAGCAGCATGCGGAGACAGAGTGTCCCCTGCGGCTCGCCGTCTGCCAGCACTGTGATCTG
GAGCTTTCTGTTGTCAAGTTGAAGGAGCATGAGGATTACTGTGGAGCCCGGACAGAGCTGTGTGGCAGCT
GTGGGCGCAACGTGCTTGTGAAGGAGCTGAAGACTCACCCCGAAGTCTGTGGGAGAGTGGAGGAGGAAAA
GAGAACGGAGGCTGCCATCCCTCCGGAGGCTTACGACGAGCCCTGGAGTCAGGACAGAATCTGGATCGCA
TCCCAGCTCCTCAGACAAATCGAGGCTCTGGACCCGCCCATGAGGCTCCCTGGAAGGCCCCTGCAAGCCT
TTGAGGCAGACCCCTTCTACAGTAGGACTACCAGCCAGAGGAGCATGGCAGCCCAGTTTCCAGTTCAAAA
TAATCTTTTTGAAGAACAAGAAAGGCAGGAAAGGAACAGAAGCCGGCAGTCCCCAAAGGACAGCGCTGAG
AATAACGCACACTTGGACTTCATGTTGGCCTTGAGTCTGCAGAATGAGGGACAGGCCACCAGCATGGTAG
AGCAGGGCTTCTGGGAGTCTGTGCCTGAGGCTGATCCGGCTCGTGCTGGGCCCACATCTCTAGGTGACAT
AAAGGGTGCTGCTGACGAGATTCTGCTGCCGTGTGAGTTCTGTGAGGAGCTGTACCCAGAGGAACTGCTC
ATTGACCATCAGACAAGCTGCAACCCTTCTCATGCCTTACGTTCACTCAATACGGGCAGCTCTTCCGTCA
GGGGTATGGAAGATCCTGGTACCATCTTCCAGAACTTTCTACAACAAGCAACAAGTAACCAGTTTGACAC
TTTAATGGGCCTGAGCAGTTCAGCTGCTGTGGAAGACAGCATCATCATCCCCTGTGAGTTCTGTGGGGTG
CAGCTGGAAGAGGAGGTGCTGTTCTACCATCAGGACCAGTGTGACCAACGCCCAGCCACAGCAAACCACC
GTGCAGTGGAGGGCATCCCAGCCCAGGATTCGCAGCCAGAAAACACTTCAGCAGAGCTGTCCAGGAGGCG
GGTCAAACACCAGGGAGACCTGTCATCTGGTTACATGGATGATGTCAAGCCGGAATCAGTGAAAGGCCCC
ACCTACTCGATGTCTCCTAACAGGACCATGAACAATGTGGCTTCCTGCAACCGACTGTTGAACTTACCGT
CAGGGCCCAGGTCTGACTGCCAGCGTAGCCCTCCCGGTGTGCTGAAACTCAACAACTCTGATAGCCAGGA
CATCCGTGGGCAGATGCGGGGCAGCCAGAATGGGCCCATAGCATCCGGGCACGCTCCAGTGATCCACTCT
ATTCAAAATCTCTATCCAGAAAACTTTGCGCCCTCTTTTCCTCATGGATCCCCTGGGAGTGGGAGGAGTG
AAGGTGGTCGGAGCTCTCGGGTCAGCCCTGCAGCTGCTGGCTACCACAGCAGAGCAGCAAAGGCCAAGCC
TCCAAAGCAGCAGGGAGCAGGCGATGCGGAGGAGGAAGAGGAGTGATGGTGACTCTGGGGGCTCTTGCAG
CCCCCACCCCACCCCACCCCATGCATAACAGAACATGCTGGTGCAATGTCCAGCTGCCTCTCGGGCTTAC
TGGGCAGGAGAGACACCAGATTGTAATTTTTCCTAGGTTATGGCCATTTTGTGTCTTTGCGATTGTGCTG
TGTGTGTTTGGGTTTGAGGGAGGGCTAGCTGGGAGGCCCGAGCTGCCATTGTTGAGCAGCCTTGAAATCA
GCGCTGAGTGTCTGTGGCCCTCCTGGCCCATAAGGGCTCCATCCTTAGTGATGTCATCACCACTGCTTCT
TGGTGCTTTGTGGTCCTGATGGACAGAGACAAGGGTTCTGGGATCTCAGAGTGAGAAGCATCCTCCTGGT
GGGGACCTAAGCTTGAGTGTGCAGCGTGTTACACAGGCACATGTCTGGCAGGGACACGGACTGGAGGCCA
CCTTCGTCCTTGCGGGTCACTCACCCACCTCTCTCTGTTCTTGATGAGGAATGTACTGCTTTGTTCATGC
TGCCCCTACCAGGGCCACTCCTACTCATGAGGACGGAGGCGCCAGCCCCTCCCCTTTTTATTTTACTGTT
CTAATTGTCTATTTCCTTGTAATAGAAATAAAGTTTGTATTTAGAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3987227 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3987227 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_003755 same experiment
 EMAGE:31268 same embryo
 EMAGE:29400 same embryo
 EMAGE:31227 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS