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EMAGE:29954

Padi6 ( MGI:2655198)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:29954
euxassay_006272_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8066
Entity Detected:Padi6, ( MGI:2655198)
Sequence:sense strand is shown

>T8066
AAGAGGTAATCCCTCTGGTGGGTAAGGACTGCTGACAGTGGCTAGCTTGGTAAGCCCAGCCATGTCTTTT
CAGAACTCACTCAGCCTGTCTCTGGTCAATCCCACCCATGCCCTCTGCATGGTAGGCATGGAAATCACCT
TGGACATCAGCAAGTGTGCACCAGACAAGTGCAAGTCTTTCACCATCCGTGGTTCCCCCAGGATCTTGAT
CCACATCTCTAGCTCCGTCATCGCTGGCAAAGAGGACGCTGTGGTCTGGAGGTCAATGAACCATCCCACA
GTGGCATTGGTGAGGATGGTGGCGCCCAGCCCCACTGTGGATGAAGACAAGGTGCTGGTCTCCTACTTCT
GTCCTGACCAAGAAGTCCCCACGGCCACAGCTGTGCTGTTTCTCACCGGCATCGAGATCTCCCTGGAGGC
AGACACCTATCGAGATGGACAACTGGACATGCCAAGTGATAAGCAAGCTAAGAAAAAATGGATGTGGGGT
ATGAACGGCTGGGGAGCCATCCTGCTTGTGAATTGTAGCCCTAATGCTGTGGGCCAGCCTGATGAACAGT
CCTTTCAGGAGGGCCCCAGAGAAATACAGAACCTGTCCCAGATGAATGTAACTGTGGAGGGCCCCACCAG
CATCCTACAGAATTACCAGTTGATCCTACATACCTCCGAAGAAGAGGCGAAGAAGACAAGAGTCTACTGG
TCTCAGAGAGGCTCCTCTGCGTATGAACTGGTGGTGGGACCCAACAAGCCTGTCTATCTCCTGCCTACCT
TTGAGAACCGTAGGAAAGAGGCTTTCTACGTAGAAGCCACGGAATTCCCATCTCCCAGCTTCTCGGGCCT
GATCTCCTTGTCACTCTCCCTAGTAGAAAAGGCTCACGACGAGTGCATCCCAGAGATTCCGCTCTATAAG
GATACAGTGATGTTCCGGGTGGCACCTTATATCTTCATGCCCAGCACCCAGATGCCTCTAGAGGTTTACC
TGTGCAGGGAGCTACAGCTGCAAGGCTTTGTGGACTCAGTGACCAAGCTGAGCGAGAAGAGCAAAGTGCA
GGTGGTAAAGGTCTATGAGGACCCCAACCGCCAGAGCAAGTGGCTCCAGGACGAGATGGCTTTCTGCTAT
ACTCAGGCTCCTCACAAGACGGTGTCATTGATCCTTGACACCCCAAGGGTTTCCAAGCTGGAAGACTTCC
CCATGAAATACACACTGACCCCTGGCTCTGGCTACCTGATCCGACAAACTGAGGACCACCGGGTGGCTAG
CCTGGATTCCATCGGGAACCTGATGGTATCTCCGCCTGTCAAGGCTCAGGGCAAAGACTACCCTCTAGGG
AGGGTCCTCATTGGTGGCAGCTTTTACCCCAGCTCTGAGGGCCGGGACATGAACAAGGGCCTGCGAGAAT
TCGTGTATGCCCAGCAGGTGCAGGCCCCTGTGGAACTCTTCTCGGACTGGCTGATGACCGGTCACATGGA
TCAATTCATGTGCTTTGTCCCTACCAATGATAAAAACAACGACCAGAAGGACTTCCGCCTGCTGCTGGCC
AGCCCCAGTGCCTGCTTTGAGCTGTTCGAACAGAAGCAGAAGGAAGGCTATGGGAACGTGACCCTGTTTG
AAGACATTGGAGCAGAACAGCTCCTTTCTAATGGGAGGGAGAGCAAAACTATTTCCCAAATCCTGGCTGA
CAAGAGTTTTCGAGAGCAGAACACCTATGTTGAGAAGTGTATCAGCCTGAACCGCACCCTCCTGAAGACA
GAACTGGGATTGGAGGACAAGGACATCATCCTGATCCCGCAGCTCTTCTGCCTGGAGCAGCTGACGAATG
TCCCCTCCAACCAGCAGAGCACCAAACTCTTCGCGAGGCCGTACTTCCCCGACATGCTGCAGATAATCGT
GTTGGGCAAGAACCTTGGAATCCCCAAGCCCTTTGGGCCCAAAATCAATGGCACCTGCTGCCTAGAAGAG
AAAGTGTGTGGATTACTGGAGCCCCTGGGTCTCAAGTGCACCTTCATTGATGATTTTGACTGCTACCTGG
CCAACATAGGGGACGTCTGTGCCAGTGCCATCATAAACAGGGTGCCATTTGCATTCAAGTGGTGGAAGAT
GACCCCATAAACCCCTGGCCCTGGCACGGCCAGTCCGCGCCAGTACGGATGGCCTTTGCCATAGATAGTA
GTGGGTGCGAGCGTTGTTGTTGCACTGGGTTGAAGGGACGGAGAGCTGGGAGTTAGGGTCTCTCACATCT
ACCAGCTTGACACTTCTGGAGGGGAAAAGGGAAAAGAGCGCCTATGTAAACAAATTGCCATAGAGCCAAT
AAAGCATGGTATTCTGAAAAAAAAAAAAAAG
Notes:The probe template was PCR amplified from IMAGE:30051727 using vector (pSPORT1) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template usi. T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30051727 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_006272 same experiment
 EMAGE:31550 same embryo
 EMAGE:30641 same embryo
 EMAGE:31602 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS